Pre_GI: BLASTP Hits

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Query: NC_003888:8594500:8595528 Streptomyces coelicolor A3(2), complete genome

Start: 8595528, End: 8596418, Length: 891

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015953:6212366:625056862505686251458891Streptomyces sp. SirexAA-E chromosome, complete genomeNmrA family protein6e-131466
NC_014666:5057000:505997650599765060860885Frankia sp. EuI1c chromosome, complete genomeNmrA family protein3e-37155
NC_009664:4696961:4697616469761646989681353Kineococcus radiotolerans SRS30216, complete genomeNmrA family protein1e-33144
NC_016935:2567039:259818025981802599082903Paenibacillus mucilaginosus 3016 chromosome, complete genomeNmrA family protein1e-24113
NC_013730:4573077:457926045792604580114855Spirosoma linguale DSM 74, complete genomeNmrA family protein1e-22107
NC_016582:6999074:699907469990747000012939Streptomyces bingchenggensis BCW-1 chromosome, complete genomeNmrA family protein2e-1789.7
NC_007516:774489:791194791194792174981Synechococcus sp. CC9605, complete genomehypothetical protein2e-1686.3
NC_007412:110698:136053136053136934882Anabaena variabilis ATCC 29413 plasmid C, complete sequenceNAD-dependent epimerase/dehydratase4e-1479
NC_009664:10718:130361303613986951Kineococcus radiotolerans SRS30216, complete genomeNmrA family protein6e-1375.1
NC_015703:4348545:435993043599304360799870Runella slithyformis DSM 19594 chromosome, complete genomeNmrA family protein8e-1374.3
NC_015856:2488297:249101724910172491880864Collimonas fungivorans Ter331 chromosome, complete genomehypothetical protein1e-1170.9
NC_019962:1875952:189152618915261892398873Natrinema pellirubrum DSM 15624, complete genomeputative nucleoside-diphosphate sugar epimerase2e-1169.7
NC_010676:2658495:269293026929302693796867Burkholderia phytofirmans PsJN chromosome 2, complete sequenceNmrA family protein5e-1065.1
NC_008392:666000:673265673265674131867Burkholderia cepacia AMMD chromosome 3, complete sequenceNmrA family protein1e-0964.3
NC_015186:2165628:218034521803452181223879Acidiphilium multivorum AIU301, complete genomehypothetical protein2e-0963.2
NC_008596:3404832:343005134300513430938888Mycobacterium smegmatis str. MC2 155, complete genomehypothetical protein2e-0860.5
NC_016010:137658:156591156591157448858Xanthomonas axonopodis pv. citrumelo F1 chromosome, completenucleoside-diphosphate sugar epimerase8e-0858.2
NC_009254:442360:443811443811444734924Burkholderia vietnamiensis G4 chromosome 3, complete sequenceNmrA family protein2e-0756.6
NC_014834:959986:974166974166975020855Rhodopseudomonas palustris DX-1 chromosome, complete genomeTrkA-N domain-containing protein2e-0756.6
NC_011146:3304416:331471433147143315571858Geobacter bemidjiensis Bem, complete genomeNmrA family protein2e-0756.2
NC_015136:1301576:132218013221801323061882Burkholderia sp. CCGE1001 chromosome 1, complete sequenceNmrA family protein3e-0756.2
NC_007508:141891:159852159852160346495Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomehypothetical protein3e-0756.2
NC_016631:4731865:473628247362824737157876Granulicella mallensis MP5ACTX8 chromosome, complete genomehypothetical protein8e-0754.7
NC_009921:565947:568079568079568966888Frankia sp. EAN1pec, complete genomeNmrA family protein8e-0754.7
NC_018681:5695343:571147857114785712431954Nocardia brasiliensis ATCC 700358 chromosome, complete genomeNmrA family protein9e-0754.3
NC_009342:1570000:158425915842591585107849Corynebacterium glutamicum R chromosome, complete genomehypothetical protein2e-0653.5
NC_014118:987889:993387993387994256870Burkholderia sp. CCGE1002 chromosome chromosome 2, completeNmrA family protein5e-0652
NC_002927:1292573:129570612957061296590885Bordetella bronchiseptica RB50, complete genomehypothetical protein7e-0651.6
NC_005125:3446470:346140534614053462373969Gloeobacter violaceus PCC 7421, complete genomehypothetical protein9e-0651.2