Pre_GI: BLASTP Hits

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Query: NC_003888:7706226:7713425 Streptomyces coelicolor A3(2), complete genome

Start: 7713425, End: 7714828, Length: 1404

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018750:6192970:6202209620220962035911383Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein1e-80300
NC_016887:2269177:2285469228546922867371269Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein5e-73275
NC_007777:2749422:2754597275459727559101314Frankia sp. CcI3, complete genomehypothetical protein2e-70266
NC_013131:7945280:7952942795294279542311290Catenulispora acidiphila DSM 44928, complete genomeputative transcriptional regulator5e-1686.3
NC_014210:4122514:4132230413223041334711242Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein2e-1584
NC_018524:557666:5811115811115825141404Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehypothetical protein1e-1481.3
NC_015656:4879904:4901897490189749033001404Frankia symbiont of Datisca glomerata chromosome, complete genomehypothetical protein5e-1479.7
NC_015434:1173794:118724111872411188233993Verrucosispora maris AB-18-032 chromosome, complete genomehypothetical protein2e-1274.3
NC_014391:277555:2878432878432892641422Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehelix-turn-helix domain-containing protein3e-1273.6
NC_019673:8799533:8816690881669088181051416Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-1170.9
NC_016109:4581467:4581467458146745828941428Kitasatospora setae KM-6054, complete genomehypothetical protein3e-1170.1
NC_016582:3268857:3276925327692532782741350Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein7e-1168.9
NC_015434:228912:2333232333232345941272Verrucosispora maris AB-18-032 chromosome, complete genomehelix-turn-helix domain-containing protein1e-1068.2
NC_010572:4181403:4184781418478141863221542Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein1e-1068.2
NC_016111:3486000:3489611348961134910081398Streptomyces cattleya NRRL 8057, complete genomeRegulator3e-1067
NC_014210:5309121:5321294532129453226371344Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein1e-0861.6
NC_016111:3577572:3593545359354535949361392Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-0861.2
NC_015656:1592021:1596894159689415979311038Frankia symbiont of Datisca glomerata chromosome, complete genome3e-0860.5
NC_008278:3025899:3033731303373130352031473Frankia alni ACN14a, complete genomehypothetical protein5e-0859.7
NC_016109:4581467:4597653459765345989661314Kitasatospora setae KM-6054, complete genomehypothetical protein6e-0859.3
NC_013947:2113941:2119465211946521208471383Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein2e-0757.8
NC_013093:1213908:1229350122935012307561407Actinosynnema mirum DSM 43827, complete genomehypothetical protein3e-0757
NC_013929:5927935:5942582594258259439581377Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein5e-0756.2
NC_016111:2952338:2960559296055929616681110Streptomyces cattleya NRRL 8057, complete genomehypothetical protein8e-0755.5
NC_019673:8581000:8592285859228585936761392Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-0655.1
NC_016582:6999074:7021722702172270231551434Streptomyces bingchenggensis BCW-1 chromosome, complete genomesporulation associated protein2e-0654.3
NC_019673:3726519:3735198373519837366851488Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-0653.5
NC_013595:9149273:9160210916021091615681359Streptosporangium roseum DSM 43021, complete genomehypothetical protein5e-0652.8