Pre_GI: BLASTP Hits

Some Help

Query: NC_003888:7706226:7712805 Streptomyces coelicolor A3(2), complete genome

Start: 7712805, End: 7713266, Length: 462

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003155:921494:9359539359539387272775Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase2e-1374.3
NC_015957:115133:1151331151331177992667Streptomyces violaceusniger Tu 4113 chromosome, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism7e-1372.8
NC_016109:5290000:5311921531192153146922772Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase6e-1269.7
NC_014165:2888961:290422029042202904699480Thermobispora bispora DSM 43833 chromosome, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase1e-1065.5
NC_016111:4003290:401778740177874018248462Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-1064.7
NC_016582:10015558:1002419110024191100262512061Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase4e-1063.9
NC_003888:6470909:648284364828436483358516Streptomyces coelicolor A3(2), complete genomehypothetical protein3e-0960.8
NC_016111:3659269:367122436712243671643420Streptomyces cattleya NRRL 8057, complete genomehypothetical protein9e-0959.3
NC_016582:1639375:1662621166262116654342814Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative regulatory protein phosphatase3e-0857.8
NC_003155:6295078:630453263045326305194663Streptomyces avermitilis MA-4680, complete genomehypothetical protein3e-0857.4
NC_015957:7249873:726567072656707266197528Streptomyces violaceusniger Tu 4113 chromosome, complete genome4e-0857
NC_018750:6588206:660790366079036608355453Streptomyces venezuelae ATCC 10712, complete genomeprobable regulatory protein4e-0857
NC_015953:5444572:5460375546037554629992625Streptomyces sp. SirexAA-E chromosome, complete genomeputative PAS/PAC sensor protein4e-0753.5
NC_003155:210240:2228712228712246911821Streptomyces avermitilis MA-4680, complete genomehypothetical protein5e-0753.1
NC_014165:27246:313863138632066681Thermobispora bispora DSM 43833 chromosome, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase6e-0753.1
NC_016109:5290000:5314849531484953173112463Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase1e-0652.4
NC_016582:3763476:377374537737453774215471Streptomyces bingchenggensis BCW-1 chromosome, complete genomeregulatory protein1e-0652
NC_013510:3065000:308386530838653084233369Thermomonospora curvata DSM 43183, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase1e-0652
NC_016111:3577572:358579435857943586369576Streptomyces cattleya NRRL 8057, complete genomeregulatory protein1e-0652
NC_013093:3768790:377299837729983773411414Actinosynnema mirum DSM 43827, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase2e-0651.6
NC_010572:82000:936989369894207510Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative regulatory protein containing a conserved C-terminal domain6e-0649.7
NC_013510:2782240:278674527867452787260516Thermomonospora curvata DSM 43183, complete genome7e-0649.7
NC_013929:3600343:362454136245413624975435Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-0548.9