Pre_GI: BLASTP Hits

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Query: NC_003888:7706226:7711970 Streptomyces coelicolor A3(2), complete genome

Start: 7711970, End: 7712521, Length: 552

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013131:7889127:789497278949727895427456Catenulispora acidiphila DSM 44928, complete genomeprotein of unknown function UPF00663e-37154
NC_014915:3039639:305019830501983050659462Geobacillus sp. Y412MC52 chromosome, complete genomeUncharacterized protein family UPF00665e-29127
NC_009328:2905000:291277529127752913248474Geobacillus thermodenitrificans NG80-2 chromosome, complete genometranscriptional regulator7e-28123
NC_014639:2169277:217014121701412170599459Bacillus atrophaeus 1942 chromosome, complete genomehypothetical protein5e-25114
CP002207:2169277:217014121701412170599459Bacillus atrophaeus 1942, complete genomehypothetical protein5e-25114
NC_014391:3103000:312543131254313125898468Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein2e-24112
NC_009637:1421885:142755214275521428100549Methanococcus maripaludis C7 chromosome, complete genomehypothetical protein3e-1684.7
NC_015518:1518047:153795215379521538395444Acidianus hospitalis W1 chromosome, complete genomehypothetical protein7e-1270.1
NC_008701:391216:408124408124408600477Pyrobaculum islandicum DSM 4184, complete genomeprotein of unknown function UPF00661e-1169.3
NC_014507:863210:865780865780866358579Methanoplanus petrolearius DSM 11571 chromosome, complete genomehypothetical protein3e-1167.8
NC_018870:81396:964049640496856453Thermacetogenium phaeum DSM 12270 chromosome, complete genomemethyltransferase YaeB5e-1063.9
NC_008554:2308500:232819923281992328594396Syntrophobacter fumaroxidans MPOB, complete genomeprotein of unknown function UPF00663e-0961.2
NC_007645:5397526:542575654257565426475720Hahella chejuensis KCTC 2396, complete genomehypothetical protein8e-0960.1
NC_008701:1719464:172465017246501725078429Pyrobaculum islandicum DSM 4184, complete genomeprotein of unknown function UPF00663e-0857.8
NC_009832:4136878:415343641534364154143708Serratia proteamaculans 568, complete genomeprotein of unknown function UPF00669e-0856.6
NC_008536:2717891:273133027313302731791462Solibacter usitatus Ellin6076, complete genomeprotein of unknown function UPF00661e-0756.2
NC_011060:330437:347175347175347642468Pelodictyon phaeoclathratiforme BU-1, complete genomeprotein of unknown function UPF00661e-0756.2
NC_012779:610509:617676617676618380705Edwardsiella ictaluri 93-146, complete genomehypothetical protein1e-0755.8
NC_010939:1633000:163490916349091635664756Actinobacillus pleuropneumoniae serovar 7 str. AP76, completehypothetical protein2e-0755.8
NC_011035:1908000:192252319225231923203681Neisseria gonorrhoeae NCCP11945 chromosome, complete genomehypothetical protein2e-0755.5
NC_017511:1812000:182636618263661827046681Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomehypothetical protein2e-0755.5
NC_020211:4168189:418402241840224184729708Serratia marcescens WW4, complete genomehypothetical protein, UPF0066 family2e-0755.5
NC_002946:1902642:190940719094071910087681Neisseria gonorrhoeae FA 1090, complete genomehypothetical protein2e-0755.1
NC_017512:2209000:222227522222752222955681Neisseria meningitidis WUE 2594, complete genomehypothetical protein3e-0754.7
NC_009437:166179:184881184881185315435Caldicellulosiruptor saccharolyticus DSM 8903, complete genomehypothetical protein4e-0754.7
NC_008767:2160000:217637521763752177055681Neisseria meningitidis FAM18, complete genomehypothetical protein4e-0754.3
NC_017516:2220000:223578622357862236466681Neisseria meningitidis H44/76 chromosome, complete genomehypothetical protein4e-0754.3
UCMB5137:2054735:205887920588792059037159Bacillus atrophaeus UCMB-5137hypothetical protein6e-0753.9
NC_009053:1668500:167270516727051673460756Actinobacillus pleuropneumoniae L20, complete genomehypothetical protein6e-0753.9
NC_015566:4205854:422219442221944222901708Serratia sp. AS12 chromosome, complete genomehypothetical protein6e-0753.5
NC_004631:283289:282585282585283292708Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-0652.8
NC_010102:283364:285193285193285900708Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0652.8
NC_008345:3287000:330650433065043307292789Shewanella frigidimarina NCIMB 400, complete genomeprotein of unknown function UPF00662e-0652
NC_009135:330628:349862349862350245384Methanococcus maripaludis C5, complete genomeprotein of unknown function UPF00662e-0652
NC_010278:1625695:162987916298791630634756Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,hypothetical protein3e-0651.6
NC_009654:3215205:322923932292393229958720Marinomonas sp. MWYL1, complete genomehypothetical protein3e-0651.2
NC_009637:438037:457910457910458293384Methanococcus maripaludis C7 chromosome, complete genomehypothetical protein6e-0650.4
NC_010519:71365:958669586696588723Haemophilus somnus 2336 chromosome, complete genomehypothetical protein6e-0650.4
NC_020388:1428042:146182714618271462318492Natronomonas moolapensis 8.8.11 complete genomeUPF0066 family protein8e-0650.1
NC_015160:1467445:147244714724471473349903Odoribacter splanchnicus DSM 20712 chromosome, complete genomehypothetical protein9e-0650.1