Pre_GI: BLASTP Hits

Some Help

Query: NC_003888:7706226:7710446 Streptomyces coelicolor A3(2), complete genome

Start: 7710446, End: 7711951, Length: 1506

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:4207110:4211872421187242132271356Streptomyces cattleya NRRL 8057, complete genomehypothetical protein8e-35148
NC_018750:5293829:5305786530578653071411356Streptomyces venezuelae ATCC 10712, complete genomeputative C1 regulatory protein1e-33144
NC_016582:3268857:3276925327692532782741350Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein5e-31135
NC_015434:228912:2333232333232345941272Verrucosispora maris AB-18-032 chromosome, complete genomehelix-turn-helix domain-containing protein1e-30134
NC_015656:1592021:1596894159689415979311038Frankia symbiont of Datisca glomerata chromosome, complete genome2e-29130
NC_014391:277555:2878432878432892641422Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehelix-turn-helix domain-containing protein3e-29130
NC_016582:6999074:7021722702172270231551434Streptomyces bingchenggensis BCW-1 chromosome, complete genomesporulation associated protein3e-27123
NC_017186:9604427:9620650962065096219781329Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein1e-26121
NC_014318:9604367:9620590962059096219181329Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein1e-26121
NC_019673:8581000:8592285859228585936761392Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein4e-26119
NC_013947:2113941:2119465211946521208471383Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein4e-25116
NC_015957:336500:3576383576383591011464Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein8e-25115
NC_013595:9149273:9160210916021091615681359Streptosporangium roseum DSM 43021, complete genomehypothetical protein1e-24115
NC_013929:5927935:5942582594258259439581377Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-24114
NC_016111:3577572:3593545359354535949361392Streptomyces cattleya NRRL 8057, complete genomehypothetical protein8e-23108
NC_016111:3486000:3489611348961134910081398Streptomyces cattleya NRRL 8057, complete genomeRegulator3e-22106
NC_019673:8799533:8816690881669088181051416Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein5e-22105
NC_003155:320979:321655321655322395741Streptomyces avermitilis MA-4680, complete genomehypothetical protein6e-22105
NC_013093:1213908:1229350122935012307561407Actinosynnema mirum DSM 43827, complete genomehypothetical protein8e-22105
NC_018524:557666:5811115811115825141404Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehypothetical protein2e-21104
NC_016111:2952338:2960559296055929616681110Streptomyces cattleya NRRL 8057, complete genomehypothetical protein4e-21103
NC_019673:8348604:8359958835995883614931536Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-21103
NC_015953:2603526:2615032261503226163811350Streptomyces sp. SirexAA-E chromosome, complete genomeregulatory protein1e-20101
NC_016109:2629301:2646308264630826473451038Kitasatospora setae KM-6054, complete genomehypothetical protein2e-20101
NC_019673:3607958:3623663362366336250211359Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein5e-2099.4
NC_009953:1364500:1372286137228613736471362Salinispora arenicola CNS-205 chromosome, complete genomeregulator5e-1996.3
NC_016109:4581467:4597653459765345989661314Kitasatospora setae KM-6054, complete genomehypothetical protein5e-1996.3
NC_021177:2766910:2776208277620827776231416Streptomyces fulvissimus DSM 40593, complete genomeRegulatory protein6e-1995.9
NC_016109:2629301:2643968264396826449781011Kitasatospora setae KM-6054, complete genomehypothetical protein1e-1895.1
NC_014210:4122514:4132230413223041334711242Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein3e-1894
NC_014210:5309121:5321294532129453226371344Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein2e-1687.8
NC_010572:1:3061230612320181407Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-1583.6
NC_010572:8493946:8513912851391285153181407Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-1583.6
NC_019673:2733327:2751253275125327527011449Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-1377.4
NC_016111:3026000:3046858304685830483031446Streptomyces cattleya NRRL 8057, complete genomehypothetical protein4e-1273.2
NC_009921:3098271:3116319311631931178991581Frankia sp. EAN1pec, complete genomehypothetical protein1e-1171.6
NC_014391:6848475:6854929685492968562721344Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeputative transcriptional regulator4e-1170.1
NC_008278:3025899:3033731303373130352031473Frankia alni ACN14a, complete genomehypothetical protein7e-1169.3
NC_019673:3726519:3735198373519837366851488Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein8e-1168.9
NC_007777:2749422:2754597275459727559101314Frankia sp. CcI3, complete genomehypothetical protein1e-1068.2
NC_016887:2269177:2285469228546922867371269Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein2e-1067.8
NC_013131:8480384:8502000850200085032981299Catenulispora acidiphila DSM 44928, complete genomeputative DNA-binding protein9e-1065.5
NC_016109:3591401:3631872363187236332031332Kitasatospora setae KM-6054, complete genomehypothetical protein2e-0964.7
NC_016887:4343830:435215643521564353055900Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein2e-0860.8
NC_013131:7945280:7952942795294279542311290Catenulispora acidiphila DSM 44928, complete genomeputative transcriptional regulator3e-0860.5
NC_015656:4879904:4901897490189749033001404Frankia symbiont of Datisca glomerata chromosome, complete genomehypothetical protein7e-0859.3
NC_013929:2375613:2462491246249124638881398Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein4e-0756.6
NC_010572:4181403:4184781418478141863221542Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-0653.9
NC_016582:8243727:825452782545278255252726Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein4e-0653.5
NC_018750:6192970:6202209620220962035911383Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein5e-0653.1
NC_014815:2639339:2647863264786326491971335Micromonospora sp. L5 chromosome, complete genomeDNA-binding protein9e-0652