Pre_GI: BLASTP Hits

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Query: NC_003888:7706226:7707771 Streptomyces coelicolor A3(2), complete genome

Start: 7707771, End: 7709672, Length: 1902

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007333:1559321:1559321155932115611171797Thermobifida fusca YX, complete genomehypothetical protein4e-176618
NC_015711:2201225:2215679221567922174721794Myxococcus fulvus HW-1 chromosome, complete genomeglucosyl hydrolase family protein2e-153543
NC_018750:6192970:6194207619420761965102304Streptomyces venezuelae ATCC 10712, complete genomeGlucoamylase3e-147522
NC_008095:7614000:7626507762650776283511845Myxococcus xanthus DK 1622, complete genomeglycosyl hydrolase, family 157e-139494
NC_009142:2692693:2698815269881527006371823Saccharopolyspora erythraea NRRL 2338, complete genomeglycoside hydrolase 15-related2e-128460
NC_007508:4765751:4778597477859747803961800Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative glycosyl hydrolase1e-127457
NC_014830:1871135:1900029190002919018641836Intrasporangium calvum DSM 43043 chromosome, complete genomeglycoside hydrolase 15-related protein2e-127456
NC_008541:2037793:2047213204721320490301818Arthrobacter sp. FB24 chromosome 1, complete sequenceglycoside hydrolase 15-related protein1e-125450
NC_017249:263873:2676752676752691351461Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein8e-116418
NC_016626:1592781:1615489161548916172701782Burkholderia sp. YI23 plasmid byi_1p, complete sequenceglycoside hydrolase1e-104380
NC_015711:2008578:2025955202595520277781824Myxococcus fulvus HW-1 chromosome, complete genomeglucosyl hydrolase family protein2e-103376
NC_008536:2717891:2721733272173327235501818Solibacter usitatus Ellin6076, complete genomeglycoside hydrolase 15-related protein9e-99361
NC_008697:202000:2063572063572081531797Nocardioides sp. JS614 plasmid pNOCA01, complete sequenceglycoside hydrolase 15-related1e-97357
NC_006361:3615322:3617618361761836194591842Nocardia farcinica IFM 10152, complete genomeputative glycosyl hydrolase3e-97356
NC_011027:858565:8630718630718657462676Chlorobaculum parvum NCIB 8327, complete genomeglycoside hydrolase 15-related4e-96352
NC_009380:725870:7439927439927457911800Salinispora tropica CNB-440 chromosome, complete genomeglycoside hydrolase 15-like protein2e-95350
NC_014815:3790050:3790050379005037918971848Micromonospora sp. L5 chromosome, complete genomeglycoside hydrolase 15-related protein3e-95349
NC_008278:5855401:5865398586539858672511854Frankia alni ACN14a, complete genomeConserved hypothetical protein; putative Glycosyl hydrolase family6e-95348
NC_007492:2035761:2056931205693120587601830Pseudomonas fluorescens PfO-1, complete genomeGlycoside hydrolase 15-like2e-94347
NC_019974:2421422:2447041244704124489271887Natronococcus occultus SP4, complete genomeglycosyl hydrolase, glucoamylase2e-88327
NC_014210:5409324:5409324540932454111951872Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,glycoside hydrolase 15-related protein2e-80300
NC_018581:3646489:3662516366251636645402025Gordonia sp. KTR9 chromosome, complete genomeGlucoamylase-related glycosyl hydrolase1e-71271
NC_007333:39579:4732447324491621839Thermobifida fusca YX, complete genomehypothetical protein8e-71268
NC_007508:1324000:1345318134531813471231806Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeglycosyl hydrolase5e-67256
NC_016010:1247008:1272721127272112745261806Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeglycosyl hydrolase5e-67256
NC_002754:2505750:2508253250825325100071755Sulfolobus solfataricus P2, complete genomehypothetical protein1e-64248
NC_003902:1220600:1243696124369612455011806Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein3e-61236
NC_008752:4665699:4665699466569946676721974Acidovorax avenae subsp. citrulli AAC00-1, complete genomeglycoside hydrolase 15-related protein2e-58227
NC_015138:4666544:4666544466654446684871944Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeglycoside hydrolase 15-like protein5e-58226
NC_015856:1733500:1759272175927217611311860Collimonas fungivorans Ter331 chromosome, complete genomeglucoamylase2e-56221
NC_014625:1903277:1923201192320119249881788Ketogulonicigenium vulgare Y25 chromosome, complete genomeglycoside hydrolase 15-like protein5e-56219
NC_007404:974461:9771099771099788601752Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein2e-52207
NC_013722:751473:7528347528347546151782Xanthomonas albilineans, complete genomeputative glycosyl hydrolase protein2e-49197
NC_016147:3023180:3023180302318030249611782Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeglycosyl hydrolase5e-47189
NC_014817:142976:1608891608891627481860Asticcacaulis excentricus CB 48 chromosome 2, complete sequenceglycoside hydrolase 15-related protein3e-45183
NC_007644:626992:6824356824356842431809Moorella thermoacetica ATCC 39073, complete genomeGlycoside hydrolase 15-related4e-44180
NC_013037:2851940:2852634285263428538781245Dyadobacter fermentans DSM 18053, complete genome1e-31138
NC_013235:4045589:4047598404759840493791782Nakamurella multipartita DSM 44233, complete genomeglycoside hydrolase 15-related2e-26121
NC_013235:402819:4154764154764173111836Nakamurella multipartita DSM 44233, complete genomeglycoside hydrolase 15-related1e-25118
NC_011894:983572:101365810136581014500843Methylobacterium nodulans ORS 2060, complete genome1e-1792
NC_013037:2851940:285405928540592854343285Dyadobacter fermentans DSM 18053, complete genome2e-0964.7