Pre_GI: BLASTP Hits

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Query: NC_003888:7706226:7706226 Streptomyces coelicolor A3(2), complete genome

Start: 7706226, End: 7707743, Length: 1518

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013595:3388000:3402964340296434053812418Streptosporangium roseum DSM 43021, complete genomehypothetical protein4e-37156
NC_009921:465683:4656834656834687633081Frankia sp. EAN1pec, complete genomeputative sensor with HAMP domain2e-35150
NC_009953:1484000:1500051150005115024562406Salinispora arenicola CNS-205 chromosome, complete genomehistidine kinase1e-34148
NC_014210:2597000:2630410263041026327192310Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,putative sensor with HAMP domain6e-27122
NC_006361:1827991:1827991182799118301322142Nocardia farcinica IFM 10152, complete genomeputative histidine kinase3e-24113
NC_012522:5895946:5895946589594658985972652Rhodococcus opacus B4, complete genomehypothetical protein2e-23111
NC_018524:4848154:4853369485336948556392271Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehistidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein3e-22106
NC_015957:115133:1180461180461196531608Streptomyces violaceusniger Tu 4113 chromosome, complete genomeATP-binding region ATPase domain-containing protein1e-1791.7
NC_013510:1637730:1637730163773016391871458Thermomonospora curvata DSM 43183, complete genomeATP-binding region ATPase domain protein6e-1789.4
NC_016109:4199839:4203876420387642051501275Kitasatospora setae KM-6054, complete genomeputative protein kinase4e-1583.2
NC_013093:5734002:5734002573400257358941893Actinosynnema mirum DSM 43827, complete genomeATP-binding region ATPase domain protein4e-1583.2
NC_015957:9801884:9811631981163198127941164Streptomyces violaceusniger Tu 4113 chromosome, complete genomeATP-binding region ATPase domain-containing protein5e-1583.2
NC_016582:5393568:5416504541650454190712568Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein4e-1480.1
NC_016582:8711199:8738576873857687398711296Streptomyces bingchenggensis BCW-1 chromosome, complete genomeATP-binding region, ATPase-like protein4e-1479.7
NC_016114:7116141:7122134712213471232881155Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeATP-binding region ATPase domain-containing protein1e-1171.6
NC_014391:4644500:4647734464773446502712538Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeATP-binding region ATPase domain-containing protein7e-1169.3
NC_003888:3111998:3134618313461831362731656Streptomyces coelicolor A3(2), complete genomehypothetical protein1e-0758.5