Pre_GI: BLASTP Hits

Some Help

Query: NC_003888:7659639:7689630 Streptomyces coelicolor A3(2), complete genome

Start: 7689630, End: 7690454, Length: 825

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:2932495:294355329435532944053501Streptomyces cattleya NRRL 8057, complete genomehypothetical protein6e-1375.1
NC_016114:7282882:730149173014917302366876Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0962
NC_006512:1722138:172341217234121724239828Idiomarina loihiensis L2TR, complete genomePredicted DNA-binding protein, possible transcriptional regulator7e-0961.2
NC_015953:6212366:621236662123666213253888Streptomyces sp. SirexAA-E chromosome, complete genomeXRE family transcriptional regulator2e-0859.7
NC_015556:2265940:228363422836342284488855Pseudomonas fulva 12-X chromosome, complete genomehelix-turn-helix domain protein2e-0756.6
NC_011891:17940:398153981540717903Anaeromyxobacter dehalogenans 2CP-1, complete genomehelix-turn-helix domain protein3e-0755.8
NC_015376:3320818:332540533254053326271867Burkholderia gladioli BSR3 chromosome chromosome 2, completehelix-turn-helix domain protein7e-0754.7
NC_015137:2616222:266070126607012661564864Burkholderia sp. CCGE1001 chromosome 2, complete sequencehelix-turn-helix domain-containing protein9e-0754.3
NC_007777:3000941:3023154302315430241821029Frankia sp. CcI3, complete genometranscriptional regulator, XRE family1e-0653.9
NC_006361:2534192:253999225399922540801810Nocardia farcinica IFM 10152, complete genomeputative DNA-binding protein1e-0653.5
NC_013282:1842412:185523218552321856071840Cronobacter turicensis, complete genomehypothetical protein2e-0653.1
NC_014532:988351:100425810042581005091834Halomonas elongata DSM 2581, complete genomehypothetical protein4e-0652
NC_015514:477935:491035491035491775741Cellulomonas fimi ATCC 484 chromosome, complete genomehelix-turn-helix domain-containing protein5e-0652
NC_011886:2369980:237334923733492374248900Arthrobacter chlorophenolicus A6, complete genometranscriptional regulator, XRE family5e-0652
NC_013929:5431954:544429654442965445189894Streptomyces scabiei 87.22 chromosome, complete genomeDNA-binding protein5e-0652
NC_015957:7533000:753596675359667536781816Streptomyces violaceusniger Tu 4113 chromosome, complete genomehelix-turn-helix domain-containing protein6e-0651.6