Pre_GI: BLASTP Hits

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Query: NC_003888:7028165:7049382 Streptomyces coelicolor A3(2), complete genome

Start: 7049382, End: 7051151, Length: 1770

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011959:972798:9766519766519794222772Thermomicrobium roseum DSM 5159, complete genomeFamily of unknown function (DUF470) family3e-1583.6
NC_015516:1222632:1226859122685912292852427Melissococcus plutonius ATCC 35311, complete genomehypothetical protein4e-1686.7
NC_014656:1536540:1551871155187115544442574Bifidobacterium longum subsp. longum BBMN68 chromosome, completehypothetical protein2e-1584.3
NC_014329:1041556:1060165106016510628612697Corynebacterium pseudotuberculosis FRC41 chromosome, completehypothetical protein1e-1275.1
NC_017031:1039548:1059988105998810626842697Corynebacterium pseudotuberculosis P54B96 chromosome, completehypothetical protein2e-1274.7
NC_017317:1143378:1151723115172311544042682Corynebacterium ulcerans 809 chromosome, complete genomehypothetical protein2e-1068.2
NC_021182:4310900:4327777432777743294471671Clostridium pasteurianum BC1, complete genomehypothetical protein8e-22105
NC_014633:837588:8375888375888401282541Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencehypothetical protein4e-1686.7
NC_004578:4499143:4499143449914345017852643Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-1584.3
NC_016781:1039716:1060156106015610628522697Corynebacterium pseudotuberculosis 3/99-5 chromosome, completehypothetical protein1e-1275.1
NC_017301:1037519:1059801105980110624972697Corynebacterium pseudotuberculosis C231 chromosome, completehypothetical protein2e-1275.1
NC_015683:1146913:1154573115457311572542682Corynebacterium ulcerans BR-AD22 chromosome, complete genomehypothetical protein2e-1171.2
NC_017300:1045555:1057638105763810603342697Corynebacterium pseudotuberculosis 1002 chromosome, completehypothetical protein1e-1275.1
NC_017303:1039562:1060002106000210626982697Corynebacterium pseudotuberculosis I19 chromosome, complete genomehypothetical protein2e-1275.1
NC_009806:35990:4104641046420861041Kineococcus radiotolerans SRS30216 plasmid pKRAD01, completehypothetical protein3e-1790.9
NC_018720:1510084:1510084151008415126932610Bifidobacterium asteroides PRL2011 chromosome, complete genomehypothetical protein7e-1686.3
NC_017305:1037133:1057573105757310602692697Corynebacterium pseudotuberculosis PAT10 chromosome, completehypothetical protein2e-1275.1
NC_016932:1041306:1051781105178110544772697Corynebacterium pseudotuberculosis 316 chromosome, complete genomehypothetical protein2e-1274.3
NC_015425:718384:7386537386537412622610Clostridium botulinum BKT015925 chromosome, complete genomeLysyl transferase1e-28128
NC_016887:55000:7624676246794493204Nocardia cyriacigeorgica GUH-2, complete genomelysyl-tRNA synthetase2e-99363
NC_006087:1483761:1503539150353915059292391Leifsonia xyli subsp. xyli str. CTCB07, complete genomelysyl-tRNA synthetase2e-1687.8
NC_014718:791528:8102868102868130362751Burkholderia rhizoxinica HKI 454 chromosome, complete genomeOXACILLIN RESISTANCE-ASSOCIATED PROTEIN FMTC1e-1585.1
NC_014364:1263427:1268217126821712707932577Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeprotein of unknown function DUF4706e-1892.8
NC_007777:3231649:3233966323396632358971932Frankia sp. CcI3, complete genomeprotein of unknown function DUF4707e-96351
NC_011726:1023690:1029020102902010306901671Cyanothece sp. PCC 8801, complete genomeprotein of unknown function DUF4705e-26119
NC_014654:895298:9007429007429017821041Halanaerobium sp. 'sapolanicus' chromosome, complete genomeprotein of unknown function DUF4702e-1171.2
NC_009664:4423829:4532979453297945347151737Kineococcus radiotolerans SRS30216, complete genomeprotein of unknown function DUF4703e-105382
NC_013161:1023716:1029046102904610307161671Cyanothece sp. PCC 8802, complete genomeprotein of unknown function DUF4705e-26119