Pre_GI: BLASTP Hits

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Query: NC_003888:7028165:7042054 Streptomyces coelicolor A3(2), complete genome

Start: 7042054, End: 7042737, Length: 684

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:7249873:725127272512727251955684Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein6e-66250
NC_016582:11380000:113982671139826711398932666Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein1e-60233
NC_009664:4423829:453490445349044535560657Kineococcus radiotolerans SRS30216, complete genomeSNARE associated Golgi protein2e-40165
NC_013131:9711508:971580597158059716539735Catenulispora acidiphila DSM 44928, complete genomeSNARE associated Golgi protein2e-28125
NC_003888:7561923:758963275896327590327696Streptomyces coelicolor A3(2), complete genomeintegral membrane protein5e-23107
NC_015224:3225000:324891932489193249581663Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein2e-1789.4
NC_005125:637333:653917653917654552636Gloeobacter violaceus PCC 7421, complete genomehypothetical protein6e-1787.8
NC_008699:1673181:1694650169465016960261377Nocardioides sp. JS614, complete genomephosphoesterase, PA-phosphatase related8e-1580.5
NC_010545:404111:418741418741419379639Corynebacterium urealyticum DSM 7109, complete genomehypothetical protein6e-1477.8
NC_013714:2477638:248181424818142482491678Bifidobacterium dentium Bd1, complete genomeDedA family protein2e-1375.9
NC_007164:2046937:206477320647732065411639Corynebacterium jeikeium K411, complete genomehypothetical protein3e-1375.1
NC_012779:2586175:261256926125692613234666Edwardsiella ictaluri 93-146, complete genomehypothetical protein4e-1375.1
NC_007434:3588081:362263736226373623488852Burkholderia pseudomallei 1710b chromosome I, complete sequenceDedA1e-1273.2
NC_006350:3329477:336403333640333364776744Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative DedA family transmembrane protein1e-1273.2
NC_009727:1542000:154486915448691545477609Coxiella burnetii Dugway 7E9-12, complete genomeDedA family protein2e-1273.2
NC_011528:1282691:128362012836201284228609Coxiella burnetii CbuK_Q154, complete genomeDedA family protein2e-1273.2
NC_011527:1443076:144400514440051444613609Coxiella burnetii CbuG_Q212, complete genomeDedA family protein2e-1273.2
NC_009080:2123987:215854221585422159222681Burkholderia mallei NCTC 10247 chromosome II, complete sequencemembrane protein, DedA family2e-1272.8
NC_006348:2372945:240750024075002408180681Burkholderia mallei ATCC 23344 chromosome 1, complete sequencededA family protein2e-1272.8
NC_008836:1072721:110727611072761107956681Burkholderia mallei NCTC 10229 chromosome II, complete sequencededA family protein2e-1272.8
NC_009076:3179662:321421732142173214897681Burkholderia pseudomallei 1106a chromosome I, complete sequencemembrane protein, DedA family2e-1272.8
NC_009074:3163362:319791931979193198647729Burkholderia pseudomallei 668 chromosome I, complete sequencemembrane protein, DedA family2e-1272.8
NC_014218:1163513:116949911694991170158660Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeSNARE associated Golgi protein-like protein3e-1272
NC_014363:1973670:198513119851311985799669Olsenella uli DSM 7084 chromosome, complete genomeSNARE associated Golgi protein-like protein3e-1168.9
NC_007951:570500:596249596249596920672Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative DedA family transmembrane protein4e-1168.6
NC_004129:6240904:624896162489616249617657Pseudomonas fluorescens Pf-5, complete genomeDedA family protein4e-1168.2
NC_002677:363432:368449368449369117669Mycobacterium leprae TN, complete genomehypothetical protein6e-1167.8
NC_011896:363448:368465368465369133669Mycobacterium leprae Br4923, complete genomehypothetical protein6e-1167.8
NC_008530:469802:474948474948475598651Lactobacillus gasseri ATCC 33323, complete genomeUncharacterized membrane-associated protein7e-1167.4
NC_016830:5994494:599964159996416000297657Pseudomonas fluorescens F113 chromosome, complete genomeDedA integral membrane protein1e-1066.6
NC_015703:3325780:332804633280463328684639Runella slithyformis DSM 19594 chromosome, complete genomehypothetical protein2e-1065.9
NC_012704:376783:391940391940392896957Corynebacterium kroppenstedtii DSM 44385, complete genomehypothetical protein2e-1065.9
NC_010084:2822295:285498728549872855670684Burkholderia multivorans ATCC 17616 chromosome 1, completehypothetical protein3e-1065.5
NC_015214:437733:445233445233445883651Lactobacillus acidophilus 30SC chromosome, complete genomemembrane-associated protein8e-1063.9
NC_015379:6023926:602922760292276029883657Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,membrane-related protein DedA9e-1063.9
NC_014724:439594:447961447961448611651Lactobacillus amylovorus GRL 1112 chromosome, complete genomemembrane-associated protein1e-0963.5
NC_014727:1537183:155254415525441553203660Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,hypothetical protein1e-0963.5
NC_014106:419511:425726425726426376651Lactobacillus crispatus ST1, complete genomeDedA protein2e-0962.8
NC_012438:1564794:158257915825791583187609Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomemembrane protein, DedA family3e-0962.4
NC_014960:3410741:342930734293073429975669Anaerolinea thermophila UNI-1, complete genomehypothetical protein5e-0961.2
NC_010080:445398:448794448794449444651Lactobacillus helveticus DPC 4571, complete genomeputative membrane protein6e-0961.2
NC_018528:446610:452887452887453537651Lactobacillus helveticus R0052 chromosome, complete genomemembrane-associated protein7e-0960.8
NC_013504:447891:453028453028453678651Lactobacillus johnsonii FI9785 chromosome, complete genomehypothetical protein7e-0960.8
NC_005362:550823:555960555960556610651Lactobacillus johnsonii NCC 533, complete genomeDedA7e-0960.8
NC_008537:130278:149853149853150521669Arthrobacter sp. FB24 plasmid 1, complete sequenceUncharacterized membrane-associated protein-like protein8e-0960.5
NC_017986:3283433:329825032982503298906657Pseudomonas putida ND6 chromosome, complete genomehypothetical protein1e-0860.1
NC_009513:618000:623082623082623729648Lactobacillus reuteri F275, complete genomeSNARE associated Golgi protein2e-0859.7
NC_015277:2096266:210243021024302103092663Sphingobacterium sp. 21 chromosome, complete genomeSNARE associated Golgi protein-related protein2e-0859.3
NC_008542:855347:858453858453859187735Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceputative DedA family transmembrane protein2e-0858.9
NC_008060:306170:309276309276310010735Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceputative DedA family transmembrane protein2e-0858.9
NC_017513:997716:101460010146001015244645Neisseria meningitidis G2136 chromosome, complete genomemembrane protein, dedA family3e-0858.5
NC_008525:1202852:121631512163151216959645Pediococcus pentosaceus ATCC 25745, complete genomeUncharacterized membrane-associated protein3e-0858.5
NC_010508:809974:812109812109812843735Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceSNARE associated Golgi protein5e-0858.2
NC_007510:759905:762064762064762747684Burkholderia sp. 383 chromosome 1, complete sequenceputative DedA family transmembrane protein6e-0857.8
NC_015697:1814128:182011018201101820757648Lactobacillus reuteri SD2112 chromosome, complete genomeDedA family membrane protein7e-0857.4
NC_007929:473500:477779477779478420642Lactobacillus salivarius subsp. salivarius UCC118, complete genomeDedA family protein2e-0755.8
NC_011000:3514338:356207135620713562754684Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative DedA family protein3e-0755.5
NC_009091:1514770:153716415371641537823660Prochlorococcus marinus str. MIT 9301, complete genomeDedA family; putative alkaline phosphatase-like protein5e-0754.7
NC_007576:435713:441787441787442502716Lactobacillus sakei subsp. sakei 23K, complete genomeHypothetical membrane protein5e-0754.7
NC_007958:2370619:239326723932672393875609Rhodopseudomonas palustris BisB5, complete genomeDedA family protein6e-0754.3
NC_015387:155728:168501168501168992492Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeSNARE associated Golgi protein-like protein1e-0653.1
NC_011004:2457778:248091424809142481522609Rhodopseudomonas palustris TIE-1, complete genomeSNARE associated Golgi protein2e-0653.1
NC_016605:766836:772561772561773202642Pediococcus claussenii ATCC BAA-344 chromosome, complete genomeprotein dedA2e-0652.8
NC_013715:193647:198435198435199121687Rothia mucilaginosa DY-18, complete genomeuncharacterized membrane-associated protein2e-0652.8
NC_015381:766355:768624768624769307684Burkholderia gladioli BSR3 chromosome 1, complete sequencePutative DedA family transmembrane protein5e-0651.6
NC_013730:834500:861081861081861722642Spirosoma linguale DSM 74, complete genomeSNARE associated Golgi protein-like protein5e-0651.2
NC_010999:880878:882371882371883024654Lactobacillus casei, complete genomehypothetical protein5e-0651.2
NC_014334:769205:771351771351772004654Lactobacillus casei str. Zhang chromosome, complete genomemembrane-associated protein5e-0651.2
NC_009482:87193:105034105034105693660Synechococcus sp. RCC307 chromosome, complete genomehypothetical protein7e-0650.8
NC_014820:877724:878130878130878741612Cenarchaeum symbiosum A, complete genomeuncharacterized membrane-associated protein8e-0650.4