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Query: NC_003888:7028165:7037737 Streptomyces coelicolor A3(2), complete genome

Start: 7037737, End: 7038399, Length: 663

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016114:7282882:730596573059657306621657Streptomyces flavogriseus ATCC 33331 chromosome, complete genomebeta-Ig-H3/fasciclin2e-30132
NC_020133:2144752:216338821633882163981594Mycobacterium liflandii 128FXT, complete genomemajor secreted immunogenic protein Mpt703e-1788.6
NC_010612:2215724:223287222328722233465594Mycobacterium marinum M, complete genomemajor secreted immunogenic protein Mpt703e-1788.6
NC_011886:177039:178353178353179033681Arthrobacter chlorophenolicus A6, complete genomebeta-Ig-H3/fasciclin1e-1686.7
NC_013729:1556922:157226415722641572935672Kribbella flavida DSM 17836, complete genomebeta-Ig-H3/fasciclin2e-1582.8
NC_014253:933261:933261933261934160900Methanohalobium evestigatum Z-7303 chromosome, complete genomebeta-Ig-H3/fasciclin1e-1170.1
NC_015947:3991696:400127240012724001832561Burkholderia sp. JV3 chromosome, complete genomebeta-Ig-H3/fasciclin1e-0756.2
NC_007802:4071006:409046540904654090974510Jannaschia sp. CCS1, complete genomeTwin-arginine translocation pathway signal7e-0754.3
NC_007677:324000:348791348791349354564Salinibacter ruber DSM 13855, complete genomeosteoblast specific factor 2-related protein1e-0653.5
NC_009952:592000:613772613772614260489Dinoroseobacter shibae DFL 12, complete genomefasciclin domain protein3e-0652
NC_009464:1804791:1809445180944518105661122Uncultured methanogenic archaeon RC-I, complete genomehypothetical protein3e-0652
NC_015730:3853065:387092038709203871405486Roseobacter litoralis Och 149 chromosome, complete genomehypothetical protein8e-0650.4
NC_008209:695269:699363699363699848486Roseobacter denitrificans OCh 114, complete genomehypothetical protein8e-0650.4