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Query: NC_003888:7028165:7032798 Streptomyces coelicolor A3(2), complete genome

Start: 7032798, End: 7033637, Length: 840

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016582:11380000:113921971139219711393024828Streptomyces bingchenggensis BCW-1 chromosome, complete genomeintegral membrane protein2e-96352
NC_010001:1806000:1813126181312618143131188Clostridium phytofermentans ISDg, complete genomeprotein of unknown function DUF3472e-66252
NC_012914:5194791:5200295520029552014971203Paenibacillus sp. JDR-2, complete genomeprotein of unknown function DUF3477e-58224
NC_008699:1673181:169972216997221700594873Nocardioides sp. JS614, complete genomeprotein of unknown function DUF3472e-55216
NC_008278:6885254:6912487691248769137821296Frankia alni ACN14a, complete genomePutative integral membrane protein (partial match)1e-51203
NC_014618:57707:616236162362408786Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein2e-49196
NC_007973:3240866:325854232585423259324783Ralstonia metallidurans CH34 chromosome 1, complete sequenceprotein of unknown function DUF3473e-47188
NC_011000:2732330:275898527589852759767783Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein7e-43174
NC_012914:5194791:519947651994765200273798Paenibacillus sp. JDR-2, complete genomeprotein of unknown function DUF3475e-39161
NC_015656:1830220:184099718409971841866870Frankia symbiont of Datisca glomerata chromosome, complete genomehypothetical protein7e-37154
NC_004578:6334735:634550563455056346263759Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-33142
NC_015850:1850741:185752818575281858319792Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein3e-33142
NC_011761:2067695:207698720769872077781795Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completehypothetical protein8e-33140
NC_020157:36234:416424164242385744Anabaena cylindrica PCC 7122 plasmid pANACY.02, complete sequenceprotein of unknown function DUF3478e-32137
NC_010943:2091199:210784721078472108611765Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane protein6e-31134
NC_016582:11380000:113931901139319011394092903Streptomyces bingchenggensis BCW-1 chromosome, complete genomeintegral membrane protein2e-27122
NC_021172:169215:179408179408180229822Hyphomicrobium denitrificans 1NES1, complete genomehypothetical protein2e-25116
NC_012969:2476318:249696624969662497724759Methylovorus glucosetrophus SIP3-4 chromosome, complete genomehypothetical protein7e-23107
NC_015656:1830220:184657018465701847358789Frankia symbiont of Datisca glomerata chromosome, complete genomehypothetical protein2e-21103
NC_007973:3240866:325981332598133260571759Ralstonia metallidurans CH34 chromosome 1, complete sequenceprotein of unknown function DUF3473e-21102
NC_010678:900389:922432922432923190759Ralstonia pickettii 12J chromosome 2, complete sequenceprotein of unknown function DUF3476e-21101
NC_012857:41946:639896398964747759Ralstonia pickettii 12D chromosome 2, complete genomeprotein of unknown function DUF3476e-21101
NC_011000:2732330:276026527602652761023759Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein4e-2098.6
NC_007794:262402:270703270703271512810Novosphingobium aromaticivorans DSM 12444, complete genomehypothetical protein7e-2097.8
NC_013283:113660:126712672034768Cronobacter turicensis plasmid pCTU1, complete sequencehypothetical protein1e-1894
NC_015376:662844:669576669576670352777Burkholderia gladioli BSR3 chromosome chromosome 2, completehypothetical protein4e-1892