Pre_GI: BLASTP Hits

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Query: NC_003888:7028165:7030354 Streptomyces coelicolor A3(2), complete genome

Start: 7030354, End: 7031664, Length: 1311

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013510:1637730:166353916635391664525987Thermomonospora curvata DSM 43183, complete genomehistidine kinase3e-1376.6
NC_013131:971937:9719379719379732441308Catenulispora acidiphila DSM 44928, complete genomehistidine kinase7e-1272
NC_007434:1001514:1019799101979910222522454Burkholderia pseudomallei 1710b chromosome I, complete sequencetwo-component sensor kinase transcriptional regulatory protein2e-1170.9
NC_009076:779407:7964417964417979971557Burkholderia pseudomallei 1106a chromosome I, complete sequencesensor histidine kinase3e-1170.1
NC_006350:845513:9008119008119023671557Burkholderia pseudomallei K96243 chromosome 1, complete sequencetwo-component sensor kinase transcriptional regulatory protein3e-1170.1
NC_010397:1751067:1751747175174717527631017Mycobacterium abscessus chromosome Chromosome, complete sequencePutative histidine kinase sensor of two-component system1e-1068.6
NC_009256:3056000:3058872305887230604191548Burkholderia vietnamiensis G4 chromosome 1, complete sequenceintegral membrane sensor signal transduction histidine kinase1e-1068.2
NC_009767:3335021:3350611335061133520201410Roseiflexus castenholzii DSM 13941, complete genomeintegral membrane sensor signal transduction histidine kinase4e-1066.2
NC_010804:2808676:2811572281157228131191548Burkholderia multivorans ATCC 17616 chromosome 1, completeOmpR family two-component system sensor histidine kinase1e-0965.1
NC_010084:695817:7116547116547132011548Burkholderia multivorans ATCC 17616 chromosome 1, completeintegral membrane sensor signal transduction histidine kinase1e-0965.1
NC_004193:375416:6112396112396126211383Oceanobacillus iheyensis HTE831, complete genometwo-component sensor histidine kinase3e-0963.2
NC_012491:1293086:1293086129308612945401455Brevibacillus brevis NBRC 100599, complete genometwo-component sensor histidine kinase8e-0962
NC_011000:1023800:1038662103866210402091548Burkholderia cenocepacia J2315 chromosome 1, complete sequencetwo-component regulatory system, sensor kinase protein1e-0861.2
NC_017059:376226:3963213963213978471527Rhodospirillum photometricum DSM 122, complete genomeSensor protein2e-0860.8
NC_009328:3504454:3520605352060535224341830Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesensory box histidine kinase YycG4e-0859.7
NC_009342:589741:5997715997716008051035Corynebacterium glutamicum R chromosome, complete genomehypothetical protein8e-0858.9
NC_002570:388000:4017694017694031481380Bacillus halodurans C-125, complete genometwo-component sensor histidine kinase7e-0858.9
NC_012587:3177583:3181521318152131827681248Rhizobium sp. NGR234, complete genomesensor protein7e-0858.9
NC_011146:3089297:3096485309648530978431359Geobacter bemidjiensis Bem, complete genomeheavy metal sensor signal transduction histidine kinase7e-0858.9
NC_007963:814148:8159528159528173551404Chromohalobacter salexigens DSM 3043, complete genomeperiplasmic sensor signal transduction histidine kinase9e-0858.5
NC_014532:722151:7221517221517235511401Halomonas elongata DSM 2581, complete genomeTwo-component sensor histidine kinase2e-0757.8
NC_009654:4716417:4720531472053147219611431Marinomonas sp. MWYL1, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0757.8
NC_012660:1579204:1600578160057816019631386Pseudomonas fluorescens SBW25 chromosome, complete genomeputative two-component system sensor kinase2e-0757.8
NC_014973:2894248:2894939289493928963091371Geobacter sp. M18 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase3e-0757
NC_016584:4363382:4387123438712343884661344Desulfosporosinus orientis DSM 765 chromosome, complete genomehistidine kinase5e-0756.2
NC_011751:4795928:4817737481773748188281092Escherichia coli UMN026 chromosome, complete genomesensor protein BasS/PmrB5e-0756.2
NC_011748:4695932:4716430471643047175211092Escherichia coli 55989, complete genomesensor protein BasS/PmrB6e-0755.8
CU928145:4695932:4716430471643047175211092Escherichia coli 55989 chromosome, complete genomesensory histidine kinase in two-component regulatory system with BasR6e-0755.8
NC_009708:1403434:1421842142184214232271386Yersinia pseudotuberculosis IP 31758 chromosome, complete genomesignal transduction histidine-protein kinase BaeS8e-0755.5
NC_008253:2198583:2199995219999522013981404Escherichia coli 536, complete genomesensor protein BaeS1e-0655.1
NC_021184:3149000:3161064316106431624431380Desulfotomaculum gibsoniae DSM 7213, complete genomesignal transduction histidine kinase1e-0655.1
NC_018515:3108755:3114394311439431158001407Desulfosporosinus meridiei DSM 13257 chromosome, complete genomesignal transduction histidine kinase1e-0655.1
NC_004431:2444972:2449462244946224508651404Escherichia coli CFT073, complete genomeSensor protein baeS1e-0655.1
NC_008752:3595516:3619700361970036208751176Acidovorax avenae subsp. citrulli AAC00-1, complete genomehistidine kinase1e-0655.1
NC_010473:623810:6451436451436465851443Escherichia coli str. K-12 substr. DH10B, complete genomesensory histidine kinase in two-component regulatory system with CusR, senses copper ions9e-0755.1
NC_012759:461680:4953114953114967531443Escherichia coli BW2952 chromosome, complete genomesensor kinase CusS9e-0755.1
NC_012914:569471:5901045901045911531050Paenibacillus sp. JDR-2, complete genomehistidine kinase1e-0654.7
NC_013510:517878:5292285292285305891362Thermomonospora curvata DSM 43183, complete genomehistidine kinase2e-0654.3
NC_016641:4011000:4020740402074040221011362Paenibacillus terrae HPL-003 chromosome, complete genomehistidine kinase2e-0654.3
NC_016109:116995:1364361364361377941359Kitasatospora setae KM-6054, complete genomeputative two-component system sensor kinase2e-0654.3
NC_015259:2757081:2757081275708127584541374Polymorphum gilvum SL003B-26A1 chromosome, complete genomePeriplasmic sensor signal transduction histidine kinase2e-0653.9
NC_012808:1220378:1260436126043612617521317Methylobacterium extorquens AM1, complete genomeputative integral membrane sensor signal transduction histidine kinase precursor3e-0653.9
NC_019897:128610:1538331538331556771845Thermobacillus composti KWC4 chromosome, complete genomePAS domain-containing protein3e-0653.9
NC_018681:7624000:7625978762597876273931416Nocardia brasiliensis ATCC 700358 chromosome, complete genometwo-component system histidine kinase3e-0653.5
NC_016582:11380000:1139407311394073113957551683Streptomyces bingchenggensis BCW-1 chromosome, complete genometwo-component system sensor kinase3e-0653.5
NC_015968:4117835:4163520416352041645631044Enterobacter asburiae LF7a chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase3e-0653.5
NC_013929:8474195:8483167848316784842251059Streptomyces scabiei 87.22 chromosome, complete genometwo component sensor kinase3e-0653.5
NC_008027:3953951:3956576395657639578981323Pseudomonas entomophila L48, complete genomesensor histidine kinase ArmS4e-0653.1
NC_009659:2523874:2558390255839025597211332Janthinobacterium sp. Marseille chromosome, complete genometwo-component system sensor kinase of the phosphate regulon4e-0653.1
NC_014831:1906691:1915178191517819165631386Thermaerobacter marianensis DSM 12885 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase4e-0653.1
NC_003919:3812778:3830275383027538314321158Xanthomonas axonopodis pv. citri str. 306, complete genometwo-component system sensor protein4e-0653.1
NC_017047:4037674:4038159403815940395441386Rahnella aquatilis HX2 chromosome, complete genomesensor protein QseC7e-0652.4
NC_013730:1074393:1095802109580210972471446Spirosoma linguale DSM 74, complete genomehistidine kinase6e-0652.4
NC_007513:1503955:1527688152768815291241437Synechococcus sp. CC9902, complete genomeperiplasmic sensor signal transduction histidine kinase6e-0652.4
NC_010505:3690000:3694668369466836961761509Methylobacterium radiotolerans JCM 2831, complete genomeintegral membrane sensor signal transduction histidine kinase6e-0652.4
NC_015381:3789661:3792836379283637944671632Burkholderia gladioli BSR3 chromosome 1, complete sequencesensor histidine kinase8e-0652
NC_011001:372185:3774653774653788171353Burkholderia cenocepacia J2315 chromosome 2, complete sequencetwo-component regulatory system sensor kinase9e-0652
NC_014915:2427000:2458126245812624595321407Geobacillus sp. Y412MC52 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase9e-0652
NC_007508:3835000:3852309385230938536431335Xanthomonas campestris pv. vesicatoria str. 85-10, complete genometwo-component system sensor protein9e-0652
NC_020211:1621000:1623227162322716246931467Serratia marcescens WW4, complete genomeintegral membrane sensor signal transduction histidine kinase1e-0551.6