Pre_GI: BLASTP Hits

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Query: NC_003888:6853107:6863358 Streptomyces coelicolor A3(2), complete genome

Start: 6863358, End: 6864092, Length: 735

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011881:89705:979649796498716753Arthrobacter chlorophenolicus A6 plasmid pACHL02, completeNmrA family protein2e-38159
NC_011881:89705:945279452795279753Arthrobacter chlorophenolicus A6 plasmid pACHL02, completeNmrA family protein2e-38159
NC_003888:32134:351793517935907729Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-31135
NC_014963:3942363:396116939611693961912744Terriglobus saanensis SP1PR4 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-30132
NC_008314:1559102:157418115741811574933753Ralstonia eutropha H16 chromosome 2, complete sequencepredicted nucleoside-diphosphate-sugar epimerase3e-29129
NC_012988:4353000:436543643654364366206771Methylobacterium extorquens DM4, complete genomeNAD-dependent epimerase/dehydratase2e-29129
NC_014118:1559770:157537315753731576128756Burkholderia sp. CCGE1002 chromosome chromosome 2, completeNAD-dependent epimerase/dehydratase1e-29129
NC_016111:6175975:619355861935586194292735Streptomyces cattleya NRRL 8057, complete genomenucleoside-diphosphate sugar epimerase1e-28126
NC_016582:389729:392942392942393676735Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein2e-28125
NC_008061:2548849:254938825493882550143756Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceNmrA-like8e-28124
NC_008543:2696377:271684527168452717600756Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceNmrA family protein8e-28124
NC_010515:1618093:161863216186321619387756Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceNmrA family protein3e-27122
NC_012988:4353000:436136743613674362152786Methylobacterium extorquens DM4, complete genomehypothetical protein1e-24113
NC_008596:4104476:412811841281184128876759Mycobacterium smegmatis str. MC2 155, complete genomeconserved secreted protein8e-24110
NC_012803:2195808:223648022364802237235756Micrococcus luteus NCTC 2665, complete genomepredicted nucleoside-diphosphate sugar epimerase1e-1686.7
NC_014391:16188:423314233143110780Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein5e-1684.7
NC_017904:2641270:266112726611272661918792Mycobacterium sp. MOTT36Y chromosome, complete genomehypothetical protein1e-1480.1
NC_008596:5577270:558855855885585589319762Mycobacterium smegmatis str. MC2 155, complete genomeconserved secreted protein8e-1167.4
NC_016582:389729:406923406923407381459Streptomyces bingchenggensis BCW-1 chromosome, complete genomesecreted protein1e-0963.5
NC_011146:4070000:407447340744734075360888Geobacter bemidjiensis Bem, complete genomeNAD-dependent epimerase/dehydratase8e-0960.8
NC_018524:4988810:499588049958804996509630Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeshort chain dehydrogenase family protein1e-0860.1
NC_008095:8837612:885542088554208856076657Myxococcus xanthus DK 1622, complete genomehypothetical protein6e-0651.2