Pre_GI: BLASTP Hits

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Query: NC_003888:6568000:6579213 Streptomyces coelicolor A3(2), complete genome

Start: 6579213, End: 6580073, Length: 861

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013510:5175649:518784851878485188720873Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family6e-39161
NC_007333:1129826:114288611428861143740855Thermobifida fusca YX, complete genomehelix-turn-helix motif3e-34145
NC_014165:2888961:290308629030862903943858Thermobispora bispora DSM 43833 chromosome, complete genomehelix-turn-helix domain-containing protein2e-33142
NC_003888:3111998:312209131220913122933843Streptomyces coelicolor A3(2), complete genomeregulatory protein5e-32138
NC_014666:8198554:822022582202258221091867Frankia sp. EuI1c chromosome, complete genomehelix-turn-helix domain protein7e-32137
NC_014210:618500:636013636013636870858Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,helix-turn-helix domain protein8e-31134
NC_007777:461500:470552470552471442891Frankia sp. CcI3, complete genomeputative DNA-binding protein3e-30132
NC_008278:132000:141420141420142196777Frankia alni ACN14a, complete genomePutative DNA-binding protein2e-29129
NC_016111:3577572:358466335846633585508846Streptomyces cattleya NRRL 8057, complete genomeregulatory protein4e-29128
NC_008278:6885254:690729269072926908092801Frankia alni ACN14a, complete genomeputative DNA-binding protein4e-29128
NC_013510:5309143:531986853198685320725858Thermomonospora curvata DSM 43183, complete genomehelix-turn-helix domain protein2e-28126
NC_007333:430000:437708437708438553846Thermobifida fusca YX, complete genomehelix-turn-helix motif2e-28126
NC_003155:6295078:630347763034776304325849Streptomyces avermitilis MA-4680, complete genomeDNA-binding protein1e-27123
NC_013595:8338619:834680983468098347672864Streptosporangium roseum DSM 43021, complete genomehypothetical protein2e-27123
NC_013929:7663631:766986276698627670857996Streptomyces scabiei 87.22 chromosome, complete genomeDNA-binding protein4e-27122
NC_009380:581000:589581589581590393813Salinispora tropica CNB-440 chromosome, complete genomehelix-turn-helix domain-containing protein4e-27122
NC_017093:8518961:852462485246248525514891Actinoplanes missouriensis 431, complete genomeputative DNA-binding protein2e-27122
NC_016582:6999074:701136370113637012175813Streptomyces bingchenggensis BCW-1 chromosome, complete genomeDNA-binding protein4e-27121
NC_009380:1491428:151443915144391515320882Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein7e-27120
NC_014666:1117000:113569311356931136553861Frankia sp. EuI1c chromosome, complete genomehelix-turn-helix domain protein2e-26120
NC_015957:336500:343902343902344747846Streptomyces violaceusniger Tu 4113 chromosome, complete genomehelix-turn-helix domain-containing protein2e-26119
NC_015434:4640769:464580646458064646765960Verrucosispora maris AB-18-032 chromosome, complete genomehelix-turn-helix domain-containing protein2e-26119
NC_018524:2246225:227205122720512272884834Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehelix-turn-helix family protein4e-25115
NC_016887:5988878:599475759947575995653897Nocardia cyriacigeorgica GUH-2, complete genomeputative DNA-binding protein4e-24112
NC_018750:6950695:697001969700196970894876Streptomyces venezuelae ATCC 10712, complete genomeputative DNA-binding protein2e-24112
NC_016582:3763476:377266637726663773532867Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative DNA-binding protein9e-24110
NC_009380:725870:725870725870726763894Salinispora tropica CNB-440 chromosome, complete genomehelix-turn-helix domain-containing protein9e-24110
NC_014210:4188448:419437041943704195233864Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, XRE family1e-23110
NC_015434:3755560:376664437666443767525882Verrucosispora maris AB-18-032 chromosome, complete genomehelix-turn-helix domain-containing protein2e-23110
NC_007333:2093167:210360821036082104447840Thermobifida fusca YX, complete genomehelix-turn-helix motif2e-23109
NC_018681:2176000:218106721810672181957891Nocardia brasiliensis ATCC 700358 chromosome, complete genomeXRE family transcriptional regulator3e-23109
NC_006361:498305:508199508199509092894Nocardia farcinica IFM 10152, complete genomeputative DNA-binding protein6e-23108
NC_013929:6343000:635516563551656355971807Streptomyces scabiei 87.22 chromosome, complete genomeregulatory protein1e-22107
NC_013595:8603188:862421786242178625092876Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, XRE family2e-22106
NC_014210:1588426:160049716004971601357861Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, XRE family4e-22105
NC_014211:174694:181153181153181977825Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmidtranscriptional regulator, XRE family2e-21102
NC_016887:55000:701527015270958807Nocardia cyriacigeorgica GUH-2, complete genomeputative DNA-binding protein6e-21101
NC_016582:4934854:494431449443144945195882Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein2e-20100
NC_015953:3258000:326489932648993265825927Streptomyces sp. SirexAA-E chromosome, complete genomehelix-turn-helix domain-containing protein2e-2099.4
NC_013947:5546315:555883255588325559650819Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein4e-2099
NC_018750:6192970:620089562008956201815921Streptomyces venezuelae ATCC 10712, complete genomeregulatory protein7e-2097.8
NC_013093:7174636:717771371777137178570858Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, XRE family1e-1997.1
NC_016887:511034:520181520181521056876Nocardia cyriacigeorgica GUH-2, complete genomeputative DNA-binding protein9e-1994.4
NC_014210:5048502:506004750600475060913867Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, XRE family1e-1894
NC_009142:949510:967187967187968044858Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, XRE family4e-1892
NC_016887:4403872:441600344160034416932930Nocardia cyriacigeorgica GUH-2, complete genomeputative DNA binding protein5e-1892
NC_019673:1275627:130579813057981306682885Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-1789.4
NC_013947:1537275:155630815563081557171864Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein2e-1686.7
NC_013947:656140:666520666520667377858Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehelix-turn-helix domain-containing protein2e-1686.7
NC_013510:5394432:542319154231915424000810Thermomonospora curvata DSM 43183, complete genomehypothetical protein3e-1685.9
NC_015953:3313000:332751533275153328384870Streptomyces sp. SirexAA-E chromosome, complete genomeXRE family transcriptional regulator5e-1685.1
NC_013947:4695000:470870947087094709560852Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehelix-turn-helix domain-containing protein6e-1684.7
NC_016582:9459566:946873494687349469609876Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative chitinase-promoter-binding protein2e-1582.8
NC_016111:1546505:156168615616861562519834Streptomyces cattleya NRRL 8057, complete genomeDNA-binding protein3e-1582.8
NC_016582:9076686:908588090858809086767888Streptomyces bingchenggensis BCW-1 chromosome, complete genomeDNA-binding protein7e-1581.3
NC_003155:5005913:500736750073675008239873Streptomyces avermitilis MA-4680, complete genomeDNA-binding protein2e-1480.1
NC_007333:1559321:156710515671051568004900Thermobifida fusca YX, complete genomeputative DNA-binding protein2e-1480.1
NC_016887:1949927:196913919691391969894756Nocardia cyriacigeorgica GUH-2, complete genomeXRE family transcriptional regulator2e-1480.1
NC_014830:13179:256642566426587924Intrasporangium calvum DSM 43043 chromosome, complete genomehelix-turn-helix domain protein3e-1479.3
NC_006361:1827991:183273018327301833656927Nocardia farcinica IFM 10152, complete genomeputative DNA-binding protein5e-1478.6
NC_013510:1637730:164894816489481649778831Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family6e-1478.2
NC_014210:2277971:228780622878062288609804Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, XRE family9e-1477.8
NC_014210:5309121:532623653262365327090855Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, XRE family8e-1477.8
NC_013159:1225866:123908512390851239939855Saccharomonospora viridis DSM 43017, complete genomepredicted transcription factor, MBF1 like protein8e-1477.8
NC_013929:6526745:653513365351336535969837Streptomyces scabiei 87.22 chromosome, complete genomeDNA-binding protein1e-1377.4
NC_010572:5445081:547374554737455474428684Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-1376.6
NC_003155:5443230:546098954609895461831843Streptomyces avermitilis MA-4680, complete genomeDNA-binding protein2e-1376.6
NC_016582:10104458:101224921012249210123442951Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein2e-1376.6
NC_016113:1143580:115353911535391154375837Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceDNA-binding protein2e-1376.3
NC_016582:6509792:652268365226836523435753Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein3e-1375.9
NC_003888:4927170:495958449595844960435852Streptomyces coelicolor A3(2), complete genomehypothetical protein5e-1375.1
NC_013159:2913927:292398329239832924870888Saccharomonospora viridis DSM 43017, complete genomeHelix-turn-helix protein9e-1374.3
NC_016111:4003290:401923940192394020021783Streptomyces cattleya NRRL 8057, complete genomeDNA-binding protein1e-1273.9
NC_007333:1129826:114522311452231146071849Thermobifida fusca YX, complete genomehelix-turn-helix motif2e-1273.2
NC_016582:5769080:577505757750575775887831Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative DNA-binding protein3e-1272.4
NC_013510:517878:549610549610550413804Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family4e-1272
NC_014318:7821227:785290778529077853674768Amycolatopsis mediterranei U32 chromosome, complete genomehelix-turn-helix domain-containing protein1e-1170.5
NC_017186:7841740:785295378529537853720768Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein1e-1170.5
NC_007333:810381:818333818333818782450Thermobifida fusca YX, complete genomehypothetical protein1e-1170.5
NC_016111:2651500:266677826667782667587810Streptomyces cattleya NRRL 8057, complete genomehypothetical protein1e-1170.5
NC_015957:8845274:886036588603658861210846Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative DNA-binding protein4e-1168.6
NC_013510:4319296:433051643305164331355840Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family6e-1168.2
NC_016111:4613599:461942546194254620279855Streptomyces cattleya NRRL 8057, complete genomeDNA-binding protein7e-1167.8
NC_003888:3111998:312441731244173125262846Streptomyces coelicolor A3(2), complete genomeregulatory protein1e-1067.4
NC_013510:2937530:294657529465752947384810Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family1e-1067.4
NC_010572:1872840:188568418856841886526843Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative DNA-binding protein2e-1067
NC_013510:465188:475826475826476707882Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family1e-1067
NC_003888:6853107:685990068599006860775876Streptomyces coelicolor A3(2), complete genomeDNA-binding protein5e-1065.1
NC_009953:1581088:159099015909901591757768Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein5e-1065.1
NC_016111:5515462:552035955203595521216858Streptomyces cattleya NRRL 8057, complete genomeDNA-binding protein7e-1064.7
NC_019673:2051363:206851720685172069416900Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein7e-1064.7
NC_013929:7278414:728707572870757287953879Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein8e-1064.3
NC_021177:6127431:613261361326136133464852Streptomyces fulvissimus DSM 40593, complete genomeTranscriptional regulator2e-0963.5
NC_010572:82000:922639226393192930Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative DNA-binding protein2e-0963.2
NC_013093:4247811:426232542623254263176852Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, XRE family4e-0962.4
NC_009380:4184695:419105441910544191791738Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein4e-0962.4
NC_003888:7337453:735751973575197358352834Streptomyces coelicolor A3(2), complete genomehypothetical protein5e-0962
NC_016582:9664000:967380696738069674723918Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein2e-0859.7
NC_007777:2638580:264546226454622645857396Frankia sp. CcI3, complete genomeputative DNA-binding protein3e-0859.7
NC_016111:1546505:155441115544111555241831Streptomyces cattleya NRRL 8057, complete genomehypothetical protein3e-0859.3
NC_016109:2065326:207701520770152077842828Kitasatospora setae KM-6054, complete genomehypothetical protein3e-0859.3
NC_013510:3117837:314071431407143141526813Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family3e-0859.3
NC_016582:4874500:489859048985904899270681Streptomyces bingchenggensis BCW-1 chromosome, complete genomeDNA-binding protein6e-0858.2
NC_003155:3913789:391378939137893914658870Streptomyces avermitilis MA-4680, complete genomeDNA-binding protein6e-0858.2
NC_009953:1034809:104109910410991041896798Salinispora arenicola CNS-205 chromosome, complete genomehelix-turn-helix domain-containing protein8e-0857.8
NC_016887:1093609:110105311010531101895843Nocardia cyriacigeorgica GUH-2, complete genomeputative DNA-binding protein8e-0857.8
NC_016111:1484424:148786814878681488752885Streptomyces cattleya NRRL 8057, complete genomeDNA-binding protein1e-0757.8
NC_016109:6640000:664741066474106648264855Kitasatospora setae KM-6054, complete genomeputative transcriptional regulator1e-0757.8
NC_021177:2766910:277838827783882779236849Streptomyces fulvissimus DSM 40593, complete genomePutative DNA-binding protein1e-0757.4
NC_018524:301992:314254314254315090837Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehelix-turn-helix family protein2e-0757
NC_010572:5445081:547300054730005473845846Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative DNA-binding protein2e-0756.6
NC_016109:4753493:476778247677824768546765Kitasatospora setae KM-6054, complete genomehypothetical protein2e-0756.2
NC_013595:8553904:856230685623068562959654Streptosporangium roseum DSM 43021, complete genomehypothetical protein3e-0755.8
NC_014210:1588426:159930915993091600181873Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,helix-turn-helix domain protein4e-0755.5
NC_016109:4455158:446682644668264467680855Kitasatospora setae KM-6054, complete genomeputative transcriptional regulator4e-0755.5
NC_013510:1614000:161614016161401616946807Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family5e-0755.1
NC_016582:9551123:955614895561489556957810Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein8e-0754.7
NC_021177:2309615:232354323235432324382840Streptomyces fulvissimus DSM 40593, complete genomeTranscriptional regulator, XRE family1e-0653.9
NC_016582:10104458:101286301012863010129421792Streptomyces bingchenggensis BCW-1 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0652.8
NC_013510:465188:482165482165483013849Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family4e-0652.4
NC_013947:4363250:436661243666124367442831Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0652.4
NC_016109:7445603:745160774516077452446840Kitasatospora setae KM-6054, complete genomeputative transcriptional regulator6e-0651.6
NC_013929:6343000:635192363519236352771849Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein7e-0651.6
NC_013929:1799594:182023918202391821093855Streptomyces scabiei 87.22 chromosome, complete genomeregulatory protein7e-0651.6
NC_016114:907500:914418914418915302885Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0550.8