Pre_GI: BLASTP Hits

Some Help

Query: NC_003888:6568000:6568779 Streptomyces coelicolor A3(2), complete genome

Start: 6568779, End: 6571592, Length: 2814

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013757:3613438:3632186363218636362594074Geodermatophilus obscurus DSM 43160, complete genomeWD40 repeat, subgroup4e-106386
NC_013757:1212308:1222308122230812259613654Geodermatophilus obscurus DSM 43160, complete genomeWD40 repeat, subgroup1e-92342
NC_013595:6831480:6836317683631768391482832Streptosporangium roseum DSM 43021, complete genomeWD40 repeat-domain-containing protein-like protein5e-87323
NC_003888:4251867:4252857425285742578875031Streptomyces coelicolor A3(2), complete genomeWD-40 repeat protein7e-84312
NC_016582:5769080:5776494577649457803783885Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative WD-40 repeat protein7e-82305
NC_008312:3793760:3799246379924638036914446Trichodesmium erythraeum IMS101, complete genomepeptidase C14, caspase catalytic subunit p204e-80300
NC_008312:7099417:7107744710774471122764533Trichodesmium erythraeum IMS101, complete genomeWD-40 repeat2e-79298
NC_019771:2783471:2786531278653127912674737Anabaena cylindrica PCC 7122, complete genomeWD-40 repeat-containing protein4e-79296
NC_009523:1101214:1105992110599211080822091Roseiflexus sp. RS-1 chromosome, complete genomeWD-40 repeat-containing protein4e-72273
NC_005125:2107088:2109291210929121128843594Gloeobacter violaceus PCC 7421, complete genomeWD-repeat protein3e-71270
NC_015510:2907815:2934315293431529377043390Haliscomenobacter hydrossis DSM 1100 chromosome, complete genome(myosin heavy-chain) kinase2e-69265
NC_020050:296702:2967022967023003733672Cylindrospermum stagnale PCC 7417 plasmid pCYLST.01, partialWD40 repeat-containing protein5e-65249
NC_013131:7945280:7989654798965479936584005Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, XRE family2e-62241
NC_019673:1988853:1988853198885319931334281Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-62241
NC_010547:31444:3333833338369073570Cyanothece sp. ATCC 51142 chromosome linear, complete sequenceWD-repeat protein6e-62239
NC_015510:2209663:2210628221062822135222895Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeWD40 repeat-containing protein5e-60233
NC_013510:3640776:3645961364596136514565496Thermomonospora curvata DSM 43183, complete genomemetallophosphoesterase3e-59231
NC_019892:5542478:5550952555095255528471896Singulisphaera acidiphila DSM 18658 chromosome, complete genomeWD40 repeat-containing protein4e-55217
NC_009925:6097000:6097175609717561007503576Acaryochloris marina MBIC11017, complete genomeWD-repeat protein7e-55216
NC_019892:3366463:3383062338306233851912130Singulisphaera acidiphila DSM 18658 chromosome, complete genomeWD40 repeat-containing protein5e-54213
NC_014623:9976000:9991083999108399944873405Stigmatella aurantiaca DW4/3-1 chromosome, complete genomewd-repeat containing protein1e-53211
NC_017030:5558429:5589906558990655934423537Corallococcus coralloides DSM 2259 chromosome, complete genomeWD domain-/G-beta repeat-containing protein2e-52208
NC_019892:2023500:2036750203675020402083459Singulisphaera acidiphila DSM 18658 chromosome, complete genomeWD domain, G-beta repeat-containing protein,protein kinase family protein5e-52206
NC_014666:5057000:5064677506467750662151539Frankia sp. EuI1c chromosome, complete genomeWD40 repeat, subgroup3e-51204
NC_016887:1949927:1964009196400919672783270Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein4e-51204
NC_011831:2213306:2222024222202422263884365Chloroflexus aggregans DSM 9485, complete genomeNB-ARC domain protein7e-51202
NC_007643:1504758:1512945151294515174204476Rhodospirillum rubrum ATCC 11170, complete genomeWD-40 repeat7e-51202
NC_008278:1876435:1883668188366818852301563Frankia alni ACN14a, complete genomehypothetical protein2e-50201
NC_009925:1184442:1184442118444211880053564Acaryochloris marina MBIC11017, complete genomeWD-repeat protein8e-50199
NC_009921:8215996:8240669824066982428822214Frankia sp. EAN1pec, complete genomeserine/threonine protein kinase with WD40 repeats2e-49197
NC_005125:2811986:2811986281198628155673582Gloeobacter violaceus PCC 7421, complete genomeWD-repeat protein2e-49197
NC_005125:760721:7698147698147748295016Gloeobacter violaceus PCC 7421, complete genomeWD-40 repeat protein4e-48194
NC_009927:253250:2602922602922647464455Acaryochloris marina MBIC11017 plasmid pREB2, complete sequenceWD repeat protein2e-48194
NC_009925:1003000:1020640102064010241643525Acaryochloris marina MBIC11017, complete genomeWD-repeat protein4e-47190
NC_009921:8648994:8648994864899486527913798Frankia sp. EAN1pec, complete genomeWD-40 repeat protein2e-44181
NC_013510:1614000:1626072162607216271061035Thermomonospora curvata DSM 43183, complete genomeWD-40 repeat protein6e-44180
NC_013510:1614000:1624692162469216257261035Thermomonospora curvata DSM 43183, complete genomeWD-40 repeat protein2e-42174
NC_005125:2393701:2400665240066524058305166Gloeobacter violaceus PCC 7421, complete genomeWD-repeat protein3e-41171
NC_009523:4222696:4238984423898442427123729Roseiflexus sp. RS-1 chromosome, complete genomeprotein kinase2e-41171
NC_009523:4222696:4247632424763242516243993Roseiflexus sp. RS-1 chromosome, complete genomeprotein kinase2e-41171
NC_009142:2725000:2750730275073027543713642Saccharopolyspora erythraea NRRL 2338, complete genomeWD-40 repeat protein2e-38162
NC_011060:1288862:1312949131294913158312883Pelodictyon phaeoclathratiforme BU-1, complete genomeWD-40 repeat protein5e-38160
NC_013510:465188:4773674773674795892223Thermomonospora curvata DSM 43183, complete genomeserine/threonine protein kinase with WD40 repeats6e-38160
NC_008312:6072000:6080614608061460854134800Trichodesmium erythraeum IMS101, complete genomeWD-40 repeat2e-37158
NC_008278:6885254:6892943689294368965633621Frankia alni ACN14a, complete genomehypothetical protein; putative WD-repeat protein2e-36155
NC_016582:7699420:7712533771253377150822550Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative WD-40 repeat protein2e-36155
NC_008255:4208913:4225605422560542288983294Cytophaga hutchinsonii ATCC 33406, complete genomeconserved hypothetical protein; possible WD-repeat family member2e-36154
NC_014666:7838500:7857542785754278591251584Frankia sp. EuI1c chromosome, complete genomeWD40 repeat, subgroup9e-35149
NC_009921:593665:6093876093876107721386Frankia sp. EAN1pec, complete genomeWD-40 repeat protein1e-32142
NC_008278:1876435:1880790188079018822741485Frankia alni ACN14a, complete genomePutative WD-40 repeat protein1e-32142
NC_014666:1844882:1847658184765818492531596Frankia sp. EuI1c chromosome, complete genomeWD40 repeat, subgroup2e-32141
NC_008095:5062491:5071301507130150755004200Myxococcus xanthus DK 1622, complete genomeWD domain, G-beta repeat protein1e-31139
NC_016609:2224212:2229781222978122328253045Niastella koreensis GR20-10 chromosome, complete genomeWD40 repeat-containing protein2e-31138
NC_007760:3948730:3967021396702139702513231Anaeromyxobacter dehalogenans 2CP-C, complete genomeserine/threonine protein kinase with WD40 repeats2e-31138
NC_007333:39579:6361363613658412229Thermobifida fusca YX, complete genomeTyrosine protein kinase:WD-40 repeat:Serine/threonine protein kinase2e-30135
NC_020126:7015976:7023392702339270285575166Myxococcus stipitatus DSM 14675, complete genomehypothetical protein4e-30134
NC_008278:744777:7596997596997619242226Frankia alni ACN14a, complete genomeWD-repeat protein3e-29131
NC_019697:2067740:2074553207455320784163864Chamaesiphon minutus PCC 6605, complete genomeWD40 repeat-containing protein1e-28129
NC_008312:5637974:5650391565039156523851995Trichodesmium erythraeum IMS101, complete genomeserine/threonine protein kinase with WD40 repeats1e-28129
NC_014623:243593:2527732527732549982226Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehypothetical protein8e-29129
NC_009921:3255833:3268666326866632720193354Frankia sp. EAN1pec, complete genomeWD-40 repeat protein3e-28127
NC_009921:3255833:3255833325583332599004068Frankia sp. EAN1pec, complete genomeWD-40 repeat protein2e-27125
NC_010628:7128951:7145734714573471476291896Nostoc punctiforme PCC 73102, complete genomeprotein kinase2e-27125
NC_013510:2937530:293753029375302938276747Thermomonospora curvata DSM 43183, complete genomeWD-40 repeat protein3e-27124
NC_008312:6072000:6076051607605160787952745Trichodesmium erythraeum IMS101, complete genomeWD-40 repeat8e-27123
NC_016582:7699420:771208177120817712584504Streptomyces bingchenggensis BCW-1 chromosome, complete genomeWD-40 repeat-containing protein1e-25119
NC_014666:5449884:545849054584905459467978Frankia sp. EuI1c chromosome, complete genomeWD40 repeat, subgroup2e-25118
NC_007777:4016000:4025043402504340272322190Frankia sp. CcI3, complete genomeserine/threonine protein kinase with WD40 repeats3e-25117
NC_018012:2327376:2346194234619423472461053Thiocystis violascens DSM 198 chromosome, complete genomeWD40 repeat-containing protein6e-25117
NC_009921:8215996:8253492825349282571843693Frankia sp. EAN1pec, complete genomeWD-40 repeat protein6e-25116
NC_014623:243593:2557342557342576351902Stigmatella aurantiaca DW4/3-1 chromosome, complete genomewd-repeat containing protein7e-25116
NC_019673:6362458:6384332638433263882553924Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-24115
NC_014623:243593:2508882508882525971710Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehypothetical protein9e-24113
NC_019892:3366463:3385856338585633872651410Singulisphaera acidiphila DSM 18658 chromosome, complete genomeWD40 repeat-containing protein4e-22107
NC_011884:1413831:1430871143087114327811911Cyanothece sp. PCC 7425, complete genomeserine/threonine protein kinase with WD40 repeats3e-21104
NC_021184:2936244:2952476295247629535791104Desulfotomaculum gibsoniae DSM 7213, complete genomeWD40 repeat-containing protein4e-21103
NC_017186:6395435:6465136646513664668121677Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein9e-21103
NC_014391:277555:2775552775552816584104Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeWD40 repeat, subgroup4e-20100
NC_009925:2533547:2552643255264325550392397Acaryochloris marina MBIC11017, complete genomeWD40 repeat protein1e-1999
NC_010572:802269:8119478119478158133867Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical WD-repeat protein2e-1999
NC_015711:6522808:6558799655879965612672469Myxococcus fulvus HW-1 chromosome, complete genomeWD domain-/G-beta repeat-containing protein4e-1997.4
NC_008278:3169500:3179015317901531814562442Frankia alni ACN14a, complete genomeputative protein kinase5e-1790.5
NC_008312:577302:5955395955395968101272Trichodesmium erythraeum IMS101, complete genomeWD-40 repeat9e-1789.7
NC_017030:2299592:2300161230016123026412481Corallococcus coralloides DSM 2259 chromosome, complete genomeWD domain-/G-beta repeat-containing protein1e-1689.4
NC_018681:5551000:5563833556383355678674035Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein1e-1689
NC_009848:775000:7806117806117823681758Bacillus pumilus SAFR-032, complete genomeWD-40 repeat-containing protein3e-1688.2
NC_019977:65205:839198391984839921Methanomethylovorans hollandica DSM 15978, complete genomeWD40 repeat-containing protein8e-1686.7
NC_014500:4883794:4898179489817948998791701Dickeya dadantii 3937 chromosome, complete genomeHigh-affnity carbon uptake protein Hat/HatR3e-1481.3
NC_015416:2113949:2125559212555921272021644Methanosaeta concilii GP-6 chromosome, complete genomehypothetical protein5e-1480.5
NC_019892:9280367:9280367928036792840653699Singulisphaera acidiphila DSM 18658 chromosome, complete genomeWD domain, G-beta repeat-containing protein,protein kinase family protein1e-1379.3
NC_013892:3745749:3759081375908137607781698Xenorhabdus bovienii SS-2004 chromosome, complete genomeWD domain protein1e-1172.4
NC_013947:3080290:3083980308398030851911212Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeWD-40 repeat protein2e-1172
NC_013757:3613438:3623179362317936271053927Geodermatophilus obscurus DSM 43160, complete genomeWD-40 repeat protein7e-1170.1
NC_011059:2478075:2478075247807524815033429Prosthecochloris aestuarii DSM 271, complete genomeWD-40 repeat protein7e-1067
NC_014960:1835697:1848403184840318506432241Anaerolinea thermophila UNI-1, complete genomehypothetical protein9e-1066.6
NC_014666:4118000:4133155413315541372824128Frankia sp. EuI1c chromosome, complete genomeNB-ARC domain protein1e-0966.2
NC_013665:918313:9259559259559270131059Methanocella paludicola SANAE, complete genomeputative cell surface protein9e-0963.2
NC_016582:175589:1865251865251877121188Streptomyces bingchenggensis BCW-1 chromosome, complete genomeWD-40 repeat-containing protein1e-0863.2
NC_013947:3785332:3821729382172938240532325Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeWD-40 repeat protein7e-0860.5
NC_015656:2900730:2913120291312029147451626Frankia symbiont of Datisca glomerata chromosome, complete genomeWD40 repeat-containing protein7e-0860.1
NC_020126:1274071:127916612791661280140975Myxococcus stipitatus DSM 14675, complete genomeWD-40 repeat-containing protein1e-0759.7
NC_020054:5023996:504770050477005048611912Fibrella aestuarina BUZ 2 drat genomeWD40 repeat, subgroup7e-0757
NC_021177:2309615:2329916232991623316221707Streptomyces fulvissimus DSM 40593, complete genomeWD domain protein9e-0756.6
NC_013720:1405107:1429189142918914310151827Pirellula staleyi DSM 6068, complete genomeWD-40 repeat protein1e-0656.2
NC_009921:5275694:5278279527827952817913513Frankia sp. EAN1pec, complete genome40-residue YVTN family beta-propeller repeat protein3e-0655.1
NC_020126:1274071:128666112866611287635975Myxococcus stipitatus DSM 14675, complete genomeWD-40 repeat-containing protein5e-0653.9
NC_010505:5583000:558442555844255585408984Methylobacterium radiotolerans JCM 2831, complete genome40-residue YVTN family beta-propeller repeat protein7e-0653.5