Pre_GI: BLASTP Hits

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Query: NC_003888:6470909:6482843 Streptomyces coelicolor A3(2), complete genome

Start: 6482843, End: 6483358, Length: 516

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016109:5290000:5311921531192153146922772Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase6e-1373.6
NC_013929:5431954:543593854359385436402465Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein7e-1373.2
NC_015957:115133:1151331151331177992667Streptomyces violaceusniger Tu 4113 chromosome, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism3e-1168.2
NC_018750:6588206:660790366079036608355453Streptomyces venezuelae ATCC 10712, complete genomeprobable regulatory protein4e-1167.4
NC_003155:210240:2228712228712246911821Streptomyces avermitilis MA-4680, complete genomehypothetical protein6e-1063.5
NC_013595:9651019:966629696662969666874579Streptosporangium roseum DSM 43021, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase8e-1063.2
NC_016582:10015558:1002419110024191100262512061Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase1e-0962.4
NC_003888:7706226:771280577128057713266462Streptomyces coelicolor A3(2), complete genomehypothetical protein3e-0960.8
NC_016111:1766010:182153018215301822018489Streptomyces cattleya NRRL 8057, complete genomehypothetical protein6e-0960.1
NC_010572:4585500:4587521458752145893051785Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein6e-0960.1
NC_016111:986936:993576993576994349774Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-0858.5
NC_003155:921494:9359539359539387272775Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase2e-0858.5
NC_016582:1639375:1662621166262116654342814Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative regulatory protein phosphatase5e-0857
NC_013929:6343000:635622163562216356853633Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein6e-0857
NC_003888:7337453:735676673567667357356591Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-0755.5
NC_016109:5290000:5314849531484953173112463Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase2e-0755.5
NC_007777:2749422:275696227569622757555594Frankia sp. CcI3, complete genomeputative serine/threonine kinaseanti-sigma factor2e-0755.1
NC_003888:4523500:4526332452633245279901659Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-0755.1
NC_013510:2782240:278674527867452787260516Thermomonospora curvata DSM 43183, complete genome3e-0754.7
NC_014165:2888961:290422029042202904699480Thermobispora bispora DSM 43833 chromosome, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase5e-0753.9
NC_016582:7033000:7033222703322270352732052Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase9e-0752.8
NC_009921:3098271:311324131132413113924684Frankia sp. EAN1pec, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase3e-0651.2
NC_016111:3577572:358579435857943586369576Streptomyces cattleya NRRL 8057, complete genomeregulatory protein1e-0549.7