Pre_GI: BLASTP Hits

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Query: NC_003888:6103534:6138765 Streptomyces coelicolor A3(2), complete genome

Start: 6138765, End: 6139295, Length: 531

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010814:243384:252965252965253513549Geobacter lovleyi SZ, complete genomeDomain of unknown function DUF18632e-37154
NC_018581:32092:418674186742466600Gordonia sp. KTR9 chromosome, complete genomeprotein of unknown function DUF18631e-34145
NC_014394:1554373:156609215660921566637546Gallionella capsiferriformans ES-2 chromosome, complete genomehypothetical protein1e-24112
NC_007948:5026122:503218650321865032725540Polaromonas sp. JS666, complete genomehypothetical protein5e-2097.1
NC_014364:394899:410187410187410729543Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeDomain of unknown function DUF18635e-1994
NC_013421:701005:749153749153749752600Pectobacterium wasabiae WPP163, complete genomeDomain of unknown function DUF18635e-1373.9
NC_007681:848084:852094852094852612519Methanosphaera stadtmanae DSM 3091, complete genomehypothetical protein4e-0857.4