Pre_GI: BLASTP Hits

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Query: NC_003888:5790104:5816598 Streptomyces coelicolor A3(2), complete genome

Start: 5816598, End: 5817971, Length: 1374

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:3299736:3336516333651633379071392Streptomyces scabiei 87.22 chromosome, complete genomeintegrase1e-156553
NC_003155:3652587:368369136836913684662972Streptomyces avermitilis MA-4680, complete genomeintegrase7e-125447
NC_009380:581000:6297086297086311021395Salinispora tropica CNB-440 chromosome, complete genomephage integrase family protein1e-114413
NC_014165:92500:9533495334967041371Thermobispora bispora DSM 43833 chromosome, complete genomeintegrase family protein3e-113409
NC_013510:4484000:4488419448841944897201302Thermomonospora curvata DSM 43183, complete genomeintegrase family protein8e-109394
NC_010572:3363830:3404397340439734057611365Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative integrase1e-105383
NC_013595:702482:7083967083967097601365Streptosporangium roseum DSM 43021, complete genomehypothetical protein1e-104380
NC_013595:9547254:9555446955544695568101365Streptosporangium roseum DSM 43021, complete genomehypothetical protein2e-102373
NC_013595:151500:1515681515681529381371Streptosporangium roseum DSM 43021, complete genomehypothetical protein1e-101370
NC_015312:5876957:5895438589543858968231386Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeintegrase family protein2e-99363
NC_015656:4367764:4382288438228843837241437Frankia symbiont of Datisca glomerata chromosome, complete genomeintegrase family protein4e-93342
NC_008699:590000:5953415953415967201380Nocardioides sp. JS614, complete genomephage integrase family protein3e-87322
NC_016114:3008500:3033511303351130348901380Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeintegrase2e-86319
NC_016111:3736254:3741839374183937432511413Streptomyces cattleya NRRL 8057, complete genomehypothetical protein5e-85315
NC_019673:8799533:8824959882495988263501392Saccharothrix espanaensis DSM 44229 complete genomeIntegrase family protein2e-84313
NC_013131:7889127:7897171789717178986491479Catenulispora acidiphila DSM 44928, complete genomeintegrase family protein2e-77290
NC_013929:2375613:2403530240353024050051476Streptomyces scabiei 87.22 chromosome, complete genomemobile element protein3e-76286
NC_013947:1011899:1032194103219410336061413Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein2e-72273
NC_014210:5270643:5291874529187452933071434Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integrase family protein1e-71270
NC_015953:2349503:2356210235621023572621053Streptomyces sp. SirexAA-E chromosome, complete genomeintegrase family protein6e-55215
NC_013510:4960500:497080549708054971485681Thermomonospora curvata DSM 43183, complete genomeintegrase family protein3e-40166
NC_015957:3282183:329835832983583299092735Streptomyces violaceusniger Tu 4113 chromosome, complete genome1e-38160
NC_003155:3652587:368464336846433684981339Streptomyces avermitilis MA-4680, complete genomeintegrase2e-33144
NC_016111:613729:617856617856618434579Streptomyces cattleya NRRL 8057, complete genomePhage integrase (fragment)4e-28126
NC_013595:480000:490711490711491391681Streptosporangium roseum DSM 43021, complete genome6e-28125
NC_015953:3782302:379321137932113793819609Streptomyces sp. SirexAA-E chromosome, complete genome2e-27123
NC_014318:6817860:683641868364186836915498Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein1e-23111
NC_009380:581000:583825583825584169345Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein2e-22107
NC_015656:1469501:147431514743151474680366Frankia symbiont of Datisca glomerata chromosome, complete genome2e-20100
NC_014318:6817860:683598368359836836384402Amycolatopsis mediterranei U32 chromosome, complete genomeintegrase3e-1997.1
NC_009921:2605721:262013826201382620452315Frankia sp. EAN1pec, complete genomeconserved hypothetical protein1e-1171.2
NC_013510:991827:100020210002021000471270Thermomonospora curvata DSM 43183, complete genomehypothetical protein2e-1067.4
NC_013595:196493:208139208139208300162Streptosporangium roseum DSM 43021, complete genome1e-0758.2
NC_013595:9994000:100084551000845510008700246Streptosporangium roseum DSM 43021, complete genome6e-0755.8
NC_013131:9903320:991333699133369913497162Catenulispora acidiphila DSM 44928, complete genome4e-0653.1