Pre_GI: BLASTP Hits

Some Help

Query: NC_003888:5790104:5810810 Streptomyces coelicolor A3(2), complete genome

Start: 5810810, End: 5811163, Length: 354

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:3602753:360842036084203608776357Streptomyces coelicolor A3(2), complete genomeregulatory protein4e-41166
NC_016114:3575955:358270335827033583065363Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeregulatory protein3e-38156
NC_013929:5248000:526216752621675262523357Streptomyces scabiei 87.22 chromosome, complete genomereplication activator protein5e-27119
NC_003155:4592000:462038646203864620742357Streptomyces avermitilis MA-4680, complete genomereplication activator protein Pra1e-26118
NC_003155:4906639:491244549124454912801357Streptomyces avermitilis MA-4680, complete genomereplication activator protein Pra1e-26118
NC_013929:3299736:334298833429883343335348Streptomyces scabiei 87.22 chromosome, complete genomeregulatory protein6e-24109
NC_010572:3925803:393532939353293935661333Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative replication activator protein Pra2e-2097.4
NC_018750:4333064:433945243394524339784333Streptomyces venezuelae ATCC 10712, complete genomeputative replication activator protein Pra6e-2096.3
NC_021177:3997727:401169340116934012037345Streptomyces fulvissimus DSM 40593, complete genomeReplication activator protein pra7e-2095.9
NC_016582:7101701:711058271105827110914333Streptomyces bingchenggensis BCW-1 chromosome, complete genomereplication activator protein Pra2e-1374.7
NC_016109:4581467:459137845913784591767390Kitasatospora setae KM-6054, complete genomeputative regulatory protein7e-1372.4
NC_013510:5115500:513536151353615135750390Thermomonospora curvata DSM 43183, complete genomehypothetical protein2e-1270.9
NC_014210:723719:734254734254734586333Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein2e-1270.9
NC_015953:1860946:186492318649231865231309Streptomyces sp. SirexAA-E chromosome, complete genome1e-1168.9
NC_016582:5393568:540606854060685406421354Streptomyces bingchenggensis BCW-1 chromosome, complete genomeregulatory protein4e-1063.2
NC_015957:1070500:107537010753701075732363Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein7e-0959.3
NC_014165:92500:100841100841101176336Thermobispora bispora DSM 43833 chromosome, complete genomehypothetical protein2e-0754.7
NC_013595:9547254:956095695609569561309354Streptosporangium roseum DSM 43021, complete genomehypothetical protein1e-0651.6
NC_003888:4314389:432852143285214328871351Streptomyces coelicolor A3(2), complete genomeregulatory protein5e-0649.7