Pre_GI: BLASTP Hits

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Query: NC_003888:5790104:5801998 Streptomyces coelicolor A3(2), complete genome

Start: 5801998, End: 5805600, Length: 3603

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013926:1270173:1273330127333012763172988Aciduliprofundum boonei T469 chromosome, complete genomeprotein of unknown function DUF4505e-1687.8
NC_011891:3369170:3379581337958133824332853Anaeromyxobacter dehalogenans 2CP-1, complete genomeprotein of unknown function DUF4503e-1275.1
NC_014330:609982:6197376197376224572721Brachyspira pilosicoli 95/1000 chromosome, complete genomefused endonuclease-methyltransferase1e-21106
NC_018607:805966:8231478231478261793033Brachyspira pilosicoli B2904 chromosome, complete genomebifunctional endonuclease/methyltransferase4e-1377.8
NC_019908:21970:4149341493445313039Brachyspira pilosicoli P43/6/78 chromosome, complete genomebifunctional endonuclease/methyltransferase1e-1276.6
NC_018604:2053585:2065813206581320686502838Brachyspira pilosicoli WesB complete genomefused endonuclease-methyltransferase2e-0862.4
NC_015383:368500:3777753777753809273153Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequencetype I restriction-modification system, M subunit, putative6e-1170.9
NC_015136:3127930:3127930312793031313193390Burkholderia sp. CCGE1001 chromosome 1, complete sequencehypothetical protein2e-0758.9
NC_007651:72952:1361171361171398123696Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein0912
NC_014151:3663295:3666135366613536701033969Cellulomonas flavigena DSM 20109 chromosome, complete genomeputative type II DNA modification enzyme4e-0655.1
NC_014934:219000:2213082213082245083201Cellulophaga algicola DSM 14237 chromosome, complete genomen-6 DNA methylase1e-1380.1
NC_015859:1898693:1918483191848319220853603Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein0829
NC_015573:2323268:2323268232326823273084041Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein2e-0656.2
NC_014666:6940532:6956702695670269602953594Frankia sp. EuI1c chromosome, complete genomehypothetical protein01172
NC_006677:1596560:1654143165414316589754833Gluconobacter oxydans 621H, complete genomePutative type II DNA modification enzyme9e-0757
NC_007645:3581114:3597228359722835989101683Hahella chejuensis KCTC 2396, complete genomeprobable DNA methylase1e-93345
NC_008254:2496622:2504989250498925081053117Mesorhizobium sp. BNC1, complete genomeN-6 DNA methylase3e-0861.6
NC_015572:3091707:3104253310425331086954443Methylomonas methanica MC09 chromosome, complete genomehypothetical protein4e-0654.7
NC_014391:1317957:1333936133393613374603525Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein01097
NC_009338:3359500:3396675339667534002443570Mycobacterium gilvum PYR-GCK chromosome, complete genomeDNA methylase01015
NC_015711:3122000:3132062313206231360123951Myxococcus fulvus HW-1 chromosome, complete genometype II DNA modification enzyme4e-0964.7
NC_019792:153661:1605111605111647524242Natronobacterium gregoryi SP2 chromosome, complete genomeN-6 DNA Methylase/Eco57I restriction endonuclease3e-0758.5
NC_019792:3446895:3458347345834734612862940Natronobacterium gregoryi SP2 chromosome, complete genometype I restriction-modification system methyltransferase subunit2e-0655.8
NC_019974:1115553:1136317113631711405644248Natronococcus occultus SP4, complete genometype I restriction-modification system methyltransferase subunit6e-0757.4
NC_007426:1489677:1497341149734115011173777Natronomonas pharaonis DSM 2160, complete genomeprobable restriction/modification enzyme9e-0860.1
NC_016887:1949927:1985531198553119891603630Nocardia cyriacigeorgica GUH-2, complete genomeDNA methylase01599
NC_008686:1472899:1485429148542914898084380Paracoccus denitrificans PD1222 chromosome 1, complete sequencehypothetical protein5e-0861.2
NC_002950:1511955:1545080154508015480883009Porphyromonas gingivalis W83, complete genometype I restriction-modification system, M subunit, putative4e-0861.6
NC_009434:695582:7593117593117617162406Pseudomonas stutzeri A1501, complete genomehypothetical protein4e-0758.2
NC_015680:663341:6764776764776803343858Pyrococcus yayanosii CH1 chromosome, complete genomehypothetical protein2e-0655.8
NC_013159:502928:5171805171805208093630Saccharomonospora viridis DSM 43017, complete genomehypothetical protein01117
NC_009142:5698100:5724174572417457278303657Saccharopolyspora erythraea NRRL 2338, complete genomeDNA methylase01056
NC_010162:10676864:1068142010681420106850133594Sorangium cellulosum 'So ce 56', complete genomeputative DNA methylase0747
NC_003888:7337453:7353207735320773568393633Streptomyces coelicolor A3(2), complete genomehypothetical protein01765
NC_010572:1872840:1881782188178218854233642Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein01657
NC_013929:1799594:1808943180894318129744032Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-0758.5
NC_013595:8603188:8626853862685386309294077Streptosporangium roseum DSM 43021, complete genomeputative type II DNA modification enzyme5e-0964.3
NC_007333:810381:8465718465718505363966Thermobifida fusca YX, complete genomeputative type II DNA modification enzyme4e-0654.7
NC_007333:1129826:1137502113750211411703669Thermobifida fusca YX, complete genomeputative DNA methylase01078
NC_015578:3371171:3379332337933233821872856Treponema primitia ZAS-2 chromosome, complete genomehypothetical protein4e-0861.2