Pre_GI: BLASTP Hits

Some Help

Query: NC_003888:5443832:5459908 Streptomyces coelicolor A3(2), complete genome

Start: 5459908, End: 5460726, Length: 819

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013521:1713416:171487417148741715632759Sanguibacter keddieii DSM 10542, complete genomemethyltransferase family protein5e-81300
NC_013595:41245:609446094461699756Streptosporangium roseum DSM 43021, complete genomehypothetical protein2e-77288
NC_013595:8162181:817440481744048175162759Streptosporangium roseum DSM 43021, complete genomehypothetical protein3e-33142
NC_006322:741516:763472763472764230759Bacillus licheniformis ATCC 14580, complete genomehypothetical protein9e-28124
NC_006270:741731:763688763688764446759Bacillus licheniformis ATCC 14580, complete genomeputative methytransferase9e-28124
NC_013174:815155:817542817542818264723Jonesia denitrificans DSM 20603, complete genomeMethyltransferase type 112e-23109
NC_016627:4323370:437326643732664374033768Clostridium clariflavum DSM 19732 chromosome, complete genomemethylase involved in ubiquinone/menaquinone biosynthesis1e-21103