Pre_GI: BLASTP Hits

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Query: NC_003888:5114147:5151168 Streptomyces coelicolor A3(2), complete genome

Start: 5151168, End: 5152157, Length: 990

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003155:5987000:600944460094446010433990Streptomyces avermitilis MA-4680, complete genomepantothenate kinase2e-178624
NC_013929:4136742:413674241367424137731990Streptomyces scabiei 87.22 chromosome, complete genomepantothenate kinase6e-172603
NC_015953:4385419:442896744289674429959993Streptomyces sp. SirexAA-E chromosome, complete genomepantothenate kinase4e-162570
NC_018750:4728870:475853847585384759506969Streptomyces venezuelae ATCC 10712, complete genomePantothenate kinase6e-159560
NC_016109:3525588:352558835255883526580993Kitasatospora setae KM-6054, complete genomeputative pantothenate kinase3e-139494
NC_015145:2942500:294463129446312945596966Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomepantothenate kinase6e-107387
NC_011886:2950411:295462729546272955622996Arthrobacter chlorophenolicus A6, complete genomepantothenate kinase2e-106385
NC_013174:650986:661280661280662254975Jonesia denitrificans DSM 20603, complete genomepantothenate kinase2e-105382
NC_008541:3282415:328448932844893285406918Arthrobacter sp. FB24 chromosome 1, complete sequencepantothenate kinase2e-104379
NC_013205:2332174:233654623365462337505960Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,pantothenate kinase5e-101367
NC_012590:1004816:102168510216851022611927Corynebacterium aurimucosum ATCC 700975, complete genomepantothenate kinase2e-99362
NC_003198:3586000:359156535915653592515951Salmonella enterica subsp. enterica serovar Typhi str. CT18,pantothenate kinase7e-94343
NC_006511:4119332:413232341323234133273951Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpantothenate kinase7e-94343
NC_007946:3683371:369006336900633691034972Escherichia coli UTI89, complete genomepantothenate kinase3e-93342
NC_010473:4256000:427179642717964272746951Escherichia coli str. K-12 substr. DH10B, complete genomepantothenate kinase3e-93341
NC_011750:4543135:455392145539214554871951Escherichia coli IAI39 chromosome, complete genomepantothenate kinase3e-93341
CU928160:4248621:426322142632214264171951Escherichia coli IAI1 chromosome, complete genomepantothenate kinase3e-93341
NC_000913:4159090:417209941720994173049951Escherichia coli K12, complete genomepantothenate kinase3e-93341
NC_010468:4455201:445732744573274458253927Escherichia coli ATCC 8739, complete genomepantothenate kinase6e-93340
NC_009436:203365:218995218995219966972Enterobacter sp. 638, complete genomepantothenate kinase1e-91337
NC_015968:204969:225041225041225991951Enterobacter asburiae LF7a chromosome, complete genomePantothenate kinase2e-91335
NC_019907:1454554:147337614733761474341966Liberibacter crescens BT-1 chromosome, complete genomepantothenate kinase5e-89327
NC_016632:1637500:165776016577601658728969Serratia symbiotica str. 'Cinara cedri' chromosome, completetype I pantothenate kinase2e-88325
NC_011184:2723000:272330127233012724224924Vibrio fischeri MJ11 chromosome I, complete sequencepantothenate kinase3e-81302
NC_012985:410307:420756420756421691936Candidatus Liberibacter asiaticus str. psy62, complete genomepantothenate kinase2e-74279
NC_010999:2059738:208046620804662081392927Lactobacillus casei, complete genomePantothenate kinase (Pantothenic acid kinase)9e-74277
NC_013199:1966334:197955019795501980476927Lactobacillus rhamnosus Lc 705, complete genomepantothenate kinase, Rts protein9e-74277
NC_014334:1848340:186582618658261866752927Lactobacillus casei str. Zhang chromosome, complete genomePanthothenate kinase5e-73275
NC_014774:293800:302377302377303315939Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completepantothenate kinase2e-67256
NC_016893:218376:238352238352239170819Wigglesworthia glossinidia endosymbiont of Glossina morsitanspantothenate kinase4e-48191
NC_014109:393500:411806411806412618813Candidatus Riesia pediculicola USDA chromosome, complete genomepantothenate kinase2e-47189
NC_004344:589375:593030593030593827798Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,pantothenate kinase1e-39164
NC_003304:51048:696596965970288630Agrobacterium tumefaciens str. C58 chromosome circular, completeputative fructose transport system kinase4e-0962.4
NC_003062:50756:694586945870087630Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein4e-0962.4
NC_015183:51500:700387003870667630Agrobacterium sp. H13-3 chromosome, complete genomePantothenate kinase4e-0859.3
NC_018644:602200:603661603661604293633Alpha proteobacterium HIMB59 chromosome, complete genomefructokinase4e-0755.8
NC_014010:1020488:102311810231181023750633Candidatus Puniceispirillum marinum IMCC1322 chromosome, completehypothetical protein1e-0654.7
NC_015064:1238899:123889912388991239558660Acidobacterium sp. MP5ACTX9 chromosome, complete genomeputative uridine kinase2e-0653.5
NC_014532:1713987:173407317340731734705633Halomonas elongata DSM 2581, complete genomeputative fructose transport system kinase5e-0652.4