Pre_GI: BLASTP Hits

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Query: NC_003888:5114147:5121109 Streptomyces coelicolor A3(2), complete genome

Start: 5121109, End: 5122923, Length: 1815

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:4927170:4957723495772349593031581Streptomyces coelicolor A3(2), complete genomehypothetical protein1e-76288
NC_016111:4613599:4621757462175746256533897Streptomyces cattleya NRRL 8057, complete genomeRhs family protein4e-47189
NC_016582:9664000:9667561966756196720844524Streptomyces bingchenggensis BCW-1 chromosome, complete genomeRhs protein1e-42175
NC_016582:6509792:6515356651535665198344479Streptomyces bingchenggensis BCW-1 chromosome, complete genomeRhs protein3e-41170
NC_015957:7408466:7439362743936274439094548Streptomyces violaceusniger Tu 4113 chromosome, complete genomeRHS repeat-associated core domain-containing protein2e-40167
NC_016582:4073850:4092949409294940976494701Streptomyces bingchenggensis BCW-1 chromosome, complete genomeRHS/YD repeat-containing protein7e-39162
NC_015957:8845274:8851108885110888553494242Streptomyces violaceusniger Tu 4113 chromosome, complete genomeRHS repeat-associated core domain-containing protein5e-39162
NC_021177:2139838:2145183214518321499314749Streptomyces fulvissimus DSM 40593, complete genomeRhs protein8e-35149
NC_015656:3653440:3669708366970836743544647Frankia symbiont of Datisca glomerata chromosome, complete genomeRHS repeat-associated core domain-containing protein5e-34146
NC_013510:1614000:1620674162067416242673594Thermomonospora curvata DSM 43183, complete genomeYD repeat-containing protein3e-33143
NC_013131:8029621:8039050803905080435374488Catenulispora acidiphila DSM 44928, complete genomeYD repeat protein1e-32142
NC_015656:2565417:2565417256541725672491833Frankia symbiont of Datisca glomerata chromosome, complete genomehypothetical protein9e-32139
NC_016114:907500:9245239245239291334611Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein5e-32139
NC_018750:3859127:3864922386492238695744653Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein1e-30135
NC_013131:9976929:99960419996041100006274587Catenulispora acidiphila DSM 44928, complete genomeYD repeat protein6e-30132
NC_013093:626473:6264736264736310024530Actinosynnema mirum DSM 43827, complete genomeYD repeat protein8e-27122
NC_010572:4024810:4041252404125240459854734Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative RHS-repeat protein4e-24113
NC_013159:3554389:3565097356509735688763780Saccharomonospora viridis DSM 43017, complete genomeRhs family protein3e-23110
NC_016887:5988878:6002889600288960076134725Nocardia cyriacigeorgica GUH-2, complete genomeputative Rhs protein2e-22108
NC_003888:6103534:614081961408196141583765Streptomyces coelicolor A3(2), complete genomehypothetical protein3e-1997.4
NC_013892:274297:2941602941602987374578Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein6e-1169.7
NC_003296:1419992:1432475143247514370284554Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE RHS-RELATED TRANSMEMBRANE PROTEIN6e-1169.7
NC_014228:2883500:2902796290279629045621767Xenorhabdus nematophila ATCC 19061, complete genome8e-1169.3
NC_014228:1336466:1343952134395213456671716Xenorhabdus nematophila ATCC 19061, complete genome9e-1169.3
NC_013892:1272448:1285265128526512898214557Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-1067.8
NC_014228:3442159:3447150344715034515804431Xenorhabdus nematophila ATCC 19061, complete genomeputative Rhs family protein3e-1067.4
NC_014310:1413210:1430985143098514356014617Ralstonia solanacearum PSI07 megaplasmid, complete sequencerhs-related transmembrane protein6e-1066.2
NC_003888:4927170:4952253495225349536771425Streptomyces coelicolor A3(2), complete genomehypothetical protein7e-1066.2
NC_013892:1272448:1275806127580612804044599Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein1e-0965.9
NC_008149:4053363:4056539405653940610774539Yersinia pestis Nepal516, complete genomemembrane protein2e-0964.7
NC_017160:4073611:4076787407678740813254539Yersinia pestis D182038 chromosome, complete genomehypothetical protein2e-0964.7
NC_004088:266543:2697192697192742634545Yersinia pestis KIM, complete genomeRhs-like core protein2e-0964.3
NC_005810:4469156:4472528447252844770694542Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein3e-0964.3
NC_010634:4234932:4237947423794742425094563Yersinia pseudotuberculosis PB1/+, complete genomeYD repeat-containing protein8e-0962.8
NC_012962:3463644:3494572349457234984113840Photorhabdus asymbiotica, complete genomehypothetical protein8e-0962.8
NC_011001:2517159:2525066252506625296134548Burkholderia cenocepacia J2315 chromosome 2, complete sequenceRHS-family protein3e-0860.8
NC_003888:4927170:4936959493695949381641206Streptomyces coelicolor A3(2), complete genomehypothetical protein4e-0860.5
NC_014228:3353896:3358694335869433619093216Xenorhabdus nematophila ATCC 19061, complete genome6e-0859.7
NC_004547:3817656:3829218382921838340744857Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeRhs protein3e-0757.4
NC_013592:1424560:1426460142646014314334974Dickeya dadantii Ech586, complete genomeYD repeat protein8e-0755.8
NC_005126:349658:3726773726773771044428Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein8e-0755.8
NC_007492:2310793:2323362232336223280924731Pseudomonas fluorescens PfO-1, complete genomeRhs family protein9e-0755.8
NC_010552:2089140:2097457209745721019444488Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceYD repeat protein1e-0655.5
NC_008543:2035292:2041830204183020463144485Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceYD repeat protein2e-0655.1
NC_008061:428501:4333524333524378364485Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencePAAR2e-0655.1
NC_010515:2358134:2362974236297423674374464Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceYD repeat protein2e-0654.7
NC_012962:1068102:1105653110565311100084356Photorhabdus asymbiotica, complete genomehypothetical protein2e-0654.7
NC_010465:429095:4486464486464522153570Yersinia pseudotuberculosis YPIII, complete genomeYD repeat protein8e-0652.8