Pre_GI: BLASTP Hits

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Query: NC_003888:4613000:4621091 Streptomyces coelicolor A3(2), complete genome

Start: 4621091, End: 4622725, Length: 1635

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008278:3601959:3608128360812836095761449Frankia alni ACN14a, complete genomeConserved hypothetical protein; putative Restriction of methylated adenine protein1e-100367
NC_017093:835260:8481818481818497071527Actinoplanes missouriensis 431, complete genomeputative restriction endonuclease9e-96351
NC_014323:3195178:3203259320325932048661608Herbaspirillum seropedicae SmR1 chromosome, complete genomemrr restriction system protein3e-70266
NC_016818:3736213:3745548374554837471791632Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completerestriction endonuclease1e-68261
NC_009921:8549757:8618727861872786207211995Frankia sp. EAN1pec, complete genomerestriction endonuclease9e-62238
NC_014924:3334386:3343893334389333456081716Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomerestriction endonuclease1e-53211
NC_018750:4333064:4348966434896643510622097Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein3e-44179
NC_018681:5378197:538950653895065390018513Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein6e-21102
NC_008346:1117802:1126703112670311279681266Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeRestriction endonuclease-like protein2e-1378.2
NC_015711:8852850:886054888605488861465918Myxococcus fulvus HW-1 chromosome, complete genomerestriction endonuclease3e-1170.5
NC_008255:32455:546515465155631981Cytophaga hutchinsonii ATCC 33406, complete genomepossible endonuclease8e-1168.9
NC_013748:24498:3187931879329281050Haloterrigena turkmenica DSM 5511 plasmid pHTUR05, completerestriction endonuclease1e-1068.2
NC_013169:2351475:236489723648972365817921Kytococcus sedentarius DSM 20547, complete genomerestriction endonuclease2e-0964.3
NC_019974:1115553:1126996112699611298572862Natronococcus occultus SP4, complete genomerestriction endonuclease3e-0963.9
NC_018528:697553:699923699923700864942Lactobacillus helveticus R0052 chromosome, complete genomeMrr restiction system protein8e-0962.4
NC_016943:4799915:481010748101074811024918Blastococcus saxobsidens DD2, complete genomemethylated adenine and cytosine restriction protein MRR1e-0862
NC_019902:1681320:169193116919311692776846Thioalkalivibrio nitratireducens DSM 14787, complete genomeMrr restriction system protein1e-0862
NC_015634:2595500:260832026083202609240921Bacillus coagulans 2-6 chromosome, complete genomerestriction endonuclease2e-0861.2
NC_018012:4184500:419439641943964195112717Thiocystis violascens DSM 198 chromosome, complete genomerestriction endonuclease3e-0860.5
NC_004307:2208591:221606922160692217004936Bifidobacterium longum NCC2705, complete genomemrr restriction endonuclease4e-0860.5
NC_010816:2326453:233521523352152336153939Bifidobacterium longum DJO10A, complete genomeRestriction endonuclease4e-0860.5
NC_017506:3825148:383632538363253836990666Marinobacter adhaerens HP15 chromosome, complete genomerestriction endonuclease6e-0859.3
NC_015737:1976000:199874019987401999660921Clostridium sp. SY8519, complete genomehypothetical protein7e-0859.3
NC_007760:4055860:407073040707304071647918Anaeromyxobacter dehalogenans 2CP-C, complete genomeRestriction endonuclease3e-0757.4
NC_004459:2443000:248811324881132488760648Vibrio vulnificus CMCP6 chromosome I, complete sequenceProbable endonuclease4e-0757
NC_015942:2213710:222298322229832223903921Acidithiobacillus ferrivorans SS3 chromosome, complete genomerestriction endonuclease6e-0756.2
NC_009720:1248866:126216312621631263095933Xanthobacter autotrophicus Py2, complete genomerestriction endonuclease7e-0755.8
NC_015136:3127930:313911031391103140021912Burkholderia sp. CCGE1001 chromosome 1, complete sequencerestriction endonuclease1e-0655.1
NC_020911:1776670:1785482178548217865731092Octadecabacter antarcticus 307, complete genomehypothetical protein2e-0655.1
NC_014408:1018448:101844810184481019362915Methanothermobacter marburgensis str. Marburg chromosome, completerestriction endonuclease2e-0654.7
NC_011761:2457560:2462775246277524640971323Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completerestriction endonuclease2e-0654.3
NC_003919:4618988:4632933463293346341141182Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein2e-0654.3
NC_002939:1480474:1494206149420614952521047Geobacter sulfurreducens PCA, complete genomeMrr restriction system protein, putative3e-0653.9
NC_012491:3704000:371332737133273714043717Brevibacillus brevis NBRC 100599, complete genomehypothetical protein4e-0653.5
NC_016629:3789554:380652038065203807419900Desulfovibrio africanus str. Walvis Bay chromosome, completerestriction endonuclease9e-0652.4