Pre_GI: BLASTP Hits

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Query: NC_003888:4613000:4618020 Streptomyces coelicolor A3(2), complete genome

Start: 4618020, End: 4618781, Length: 762

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020133:902000:920408920408921163756Mycobacterium liflandii 128FXT, complete genomephosphoglycerate mutase 1 Gpm14e-87320
NC_010612:957786:976692976692977447756Mycobacterium marinum M, complete genomephosphoglycerate mutase 1 Gpm15e-87320
NC_004369:437594:457968457968458720753Corynebacterium efficiens YS-314, complete genomephosphoglyceromutase3e-86318
NC_017219:2372000:237748023774802378220741Bifidobacterium longum subsp. infantis ATCC 15697, complete genomephosphoglyceromutase1e-82305
NC_011593:2372362:237766223776622378402741Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,phosphoglyceromutase1e-82305
NC_011026:2533017:257603725760372576786750Chloroherpeton thalassium ATCC 35110, complete genomephosphoglycerate mutase 1 family7e-79293
NC_010524:3914880:392725439272543927997744Leptothrix cholodnii SP-6, complete genomephosphoglycerate mutase 1 family1e-73275
NC_015436:474710:498161498161498910750Spirochaeta coccoides DSM 17374 chromosome, complete genomephosphoglycerate mutase5e-70264
NC_002488:1775629:180104418010441801793750Xylella fastidiosa 9a5c, complete genomephosphoglyceromutase5e-69260
NC_010673:703816:703816703816704562747Borrelia hermsii DAH, complete genomephosphoglycerate mutase9e-69259
NC_011146:3991683:401179640117964012500705Geobacter bemidjiensis Bem, complete genomephosphoglycerate mutase 1 family4e-68258
NC_006156:685344:699508699508700254747Borrelia garinii PBi chromosome linear, complete sequencephosphoglycerate mutase5e-68257
NC_012214:2673058:267816126781612678913753Erwinia pyrifoliae Ep1/96, complete genome2,3-bisphosphoglycerate-dependent phosphoglycerate mutase2e-66252
NC_013971:1283942:130225113022511303003753Erwinia amylovora ATCC 49946 chromosome, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase9e-66250
NC_013961:1246454:126472112647211265473753Erwinia amylovora, complete genomephosphoglyceromutase 19e-66250
NC_010694:2565580:257069725706972571449753Erwinia tasmaniensis, complete genome2,3-bisphosphoglycerate-dependent phosphoglycerate mutase9e-66249
NC_003116:1734000:174539517453951746078684Neisseria meningitidis Z2491, complete genomephosphoglyceromutase1e-65249
NC_011832:619874:632141632141632890750Candidatus Methanosphaerula palustris E1-9c, complete genomephosphoglycerate mutase 1 family2e-64245
NC_011083:862901:884631884631885383753Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2,3-bisphosphoglycerate-dependent phosphoglycerate mutase1e-63242
NC_003197:815964:836363836363837115753Salmonella typhimurium LT2, complete genomephosphoglyceromutase1e-63242
NC_012913:2074126:207469220746922075375684Aggregatibacter aphrophilus NJ8700, complete genome2,3-bisphosphoglycerate-dependent phosphoglycerate mutase2e-63242
NC_012125:793812:813561813561814313753Salmonella enterica subsp. enterica serovar Paratyphi C strainphosphoglyceromutase2e-63242
NC_011080:819103:840714840714841466753Salmonella enterica subsp. enterica serovar Newport str. SL254,2,3-bisphosphoglycerate-dependent phosphoglycerate mutase2e-63242
NC_006905:848000:865001865001865753753Salmonella enterica subsp. enterica serovar Choleraesuis strphosphoglyceromutase2e-63242
NC_011149:779903:800022800022800774753Salmonella enterica subsp. enterica serovar Agona str. SL483,2,3-bisphosphoglycerate-dependent phosphoglycerate mutase1e-63242
NC_011274:793681:813373813373814125753Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91phosphoglyceromutase1e-63242
NC_011294:781170:795511795511796263753Salmonella enterica subsp. enterica serovar Enteritidis strphosphoglyceromutase1e-63242
NC_017046:819414:835605835605836357753Salmonella enterica subsp. enterica serovar Typhimurium str. 798phosphoglycerate mutase1e-63242
NC_016863:819478:836703836703837455753Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1phosphoglyceromutase1e-63242
NC_016860:857500:875191875191875943753Salmonella enterica subsp. enterica serovar Typhimurium strphosphoglycerate mutase1e-63242
NC_016857:819429:835617835617836369753Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phosphoglyceromutase1e-63242
NC_016856:819482:836703836703837455753Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphosphoglyceromutase1e-63242
NC_016810:819489:835617835617836369753Salmonella enterica subsp. enterica serovar Typhimurium strphosphoglycerate mutase1e-63242
NC_011205:839425:860544860544861296753Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phosphoglyceromutase3e-63241
NC_012947:3015985:303638230363823037134753Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephosphoglyceromutase4e-63241
NC_008309:1628939:163173416317341632417684Haemophilus somnus 129PT, complete genome2,3-bisphosphoglycerate-dependent phosphoglycerate mutase2e-62239
NC_013203:472679:493285493285494046762Atopobium parvulum DSM 20469, complete genomephosphoglycerate mutase 1 family2e-62238
NC_009648:838000:854248854248855000753Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomephosphoglyceromutase3e-61235
NC_009513:169146:173678173678174364687Lactobacillus reuteri F275, complete genomephosphoglycerate mutase2e-59229
NC_015697:1295412:129990012999001300586687Lactobacillus reuteri SD2112 chromosome, complete genomephosphoglycerate mutase2e-59229
NC_015978:352478:357064357064357762699Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 22e-58225
NC_014304:77715:927669276693467702Erwinia billingiae Eb661 plasmid pEB102, complete sequence2,3-bisphosphoglycerate-dependent phosphoglycerate mutase2e-57222
NC_016816:4129299:416536841653684166141774Pantoea ananatis LMG 5342, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase9e-55213
NC_015557:1412917:141841314184131419156744Hydrogenobaculum sp. 3684 chromosome, complete genomephosphoglycerate mutase 1 family1e-54213
NC_015587:1414304:141828114182811419024744Hydrogenobaculum sp. SHO chromosome, complete genome2,3-bisphosphoglycerate-dependent phosphoglycerate mutase1e-54213
NC_011126:1430608:143611314361131436856744Hydrogenobaculum sp. Y04AAS1, complete genomephosphoglycerate mutase 1 family4e-54211
NC_015978:412856:438783438783439484702Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 11e-47189
NC_010999:2483000:248320324832032483874672Lactobacillus casei, complete genome2,3-bisphosphoglycerate-dependent phosphoglycerate mutase1e-46186
NC_013199:2386924:239061323906132391284672Lactobacillus rhamnosus Lc 705, complete genome2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1 (Phosphoglyceromutase 1) (PGAM1) (BPG-dependent PGAM1) (dPGM 1)1e-42173
NC_020126:7896447:791296679129667913574609Myxococcus stipitatus DSM 14675, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase5e-36151
NC_008095:6877388:687882668788266879434609Myxococcus xanthus DK 1622, complete genomeputative 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase2e-35149
NC_011894:2747491:275266027526602753301642Methylobacterium nodulans ORS 2060, complete genomephosphoglycerate mutase 1 family5e-33141
NC_012988:1817000:183663818366381837276639Methylobacterium extorquens DM4, complete genomephosphoglyceromutase4e-31134
NC_011757:1553500:157309015730901573728639Methylobacterium chloromethanicum CM4, complete genomephosphoglycerate mutase 1 family4e-31134
NC_010505:5583000:558984955898495590526678Methylobacterium radiotolerans JCM 2831, complete genomePhosphoglycerate mutase2e-25115
NC_014121:489500:501699501699502022324Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephosphoglyceromutase 12e-1376.3
NC_012814:1856632:185873718587371859405669Bifidobacterium animalis subsp. lactis Bl-04, complete genomeBroad specificity phosphatase1e-1273.6
NC_016627:2723678:273140727314072732099693Clostridium clariflavum DSM 19732 chromosome, complete genomefructose-2,6-bisphosphatase4e-1065.5
NC_006510:1501487:150620815062081506846639Geobacillus kaustophilus HTA426, complete genomephosphoglycerate mutase3e-0859.3
NC_010407:3174470:317556131755613176313753Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative phosphoglycerate mutase4e-0858.9
NC_014363:427393:448600448600449223624Olsenella uli DSM 7084 chromosome, complete genomePhosphoglycerate mutase5e-0858.2
NC_012438:192065:207795207795208415621Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomephosphoglycerate mutase5e-0858.2
NC_016513:1529691:153201315320131532654642Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completephosphoglycerate mutase family protein1e-0757.4
NC_020995:751311:751311751311751952642Enterococcus casseliflavus EC20, complete genomehypothetical protein2e-0756.6
NC_013165:1407000:142850114285011429145645Slackia heliotrinireducens DSM 20476, complete genomefructose-2,6-bisphosphatase3e-0755.8
NC_009380:2548878:255450825545082555110603Salinispora tropica CNB-440 chromosome, complete genomephosphoglycerate mutase4e-0755.5
NC_011898:702983:716250716250716936687Clostridium cellulolyticum H10, complete genomePhosphoglycerate mutase4e-0755.1
NC_015634:2492771:249465324946532495273621Bacillus coagulans 2-6 chromosome, complete genomephosphoglycerate mutase1e-0653.5
NC_014632:567289:579421579421580011591Ilyobacter polytropus DSM 2926 chromosome, complete genomephosphoglycerate mutase2e-0652.8
NC_018524:444217:449578449578450201624Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehistidine phosphatase super family protein3e-0652.4
NC_012988:1777618:180088418008841801237354Methylobacterium extorquens DM4, complete genomephosphoglycerate/bisphosphoglycerate mutase4e-0652
NC_009953:2727669:273441427344142735025612Salinispora arenicola CNS-205 chromosome, complete genomephosphoglycerate mutase7e-0651.2
NC_004557:2777291:278442427844242785065642Clostridium tetani E88, complete genomephosphoglycerate mutase9e-0650.8