Pre_GI: BLASTP Hits

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Query: NC_003888:4613000:4615154 Streptomyces coelicolor A3(2), complete genome

Start: 4615154, End: 4615969, Length: 816

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003155:4906639:492314449231444923956813Streptomyces avermitilis MA-4680, complete genomeAraC-family transcriptional regulator6e-86317
NC_013131:7437831:744729274472927448035744Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, AraC family9e-38157
NC_014844:762794:781918781918782757840Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeAraC type helix-turn-helix- domain-containing protein5e-1788.2
NC_016816:2925459:292545929254592926304846Pantoea ananatis LMG 5342, complete genomeAraC family transcriptional regulator1e-1480.5
NC_005773:5310339:532689853268985327734837Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, AraC family3e-1479
NC_004129:5723787:575189957518995752744846Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, AraC family6e-1374.7
NC_015733:2194676:220721222072122208114903Pseudomonas putida S16 chromosome, complete genomeAraC family transcriptional regulator5e-1271.6
NC_020260:2725201:273201127320112732829819Cronobacter sakazakii Sp291, complete genomeAraC family transcriptional regulator7e-1271.2
NC_016830:1645879:166343616634361664242807Pseudomonas fluorescens F113 chromosome, complete genomearaC family transcriptional regulator9e-1270.9
NC_004547:667988:688832688832689677846Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeAraC-family transcriptional regulator2e-0963.5
NC_012881:1062629:106437510643751065232858Desulfovibrio salexigens DSM 2638, complete genometranscriptional regulator, AraC family3e-0962.4
NC_010552:1212000:123064912306491231497849Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, AraC family9e-0857.8
NC_010501:3013103:301614130161413016962822Pseudomonas putida W619, complete genometranscriptional regulator, AraC family1e-0653.9