Pre_GI: BLASTP Hits

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Query: NC_003888:4523500:4538504 Streptomyces coelicolor A3(2), complete genome

Start: 4538504, End: 4539991, Length: 1488

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003155:5005913:5021723502172350233511629Streptomyces avermitilis MA-4680, complete genomehypothetical protein1e-119430
NC_012803:691215:7071737071737090771905Micrococcus luteus NCTC 2665, complete genometype IV secretory pathway, VirD4 component6e-29129
NC_013131:10322152:1035461310354613103564541842Catenulispora acidiphila DSM 44928, complete genomeconjugative transfer gene complex protein2e-24114
NC_014830:3438504:3455500345550034572751776Intrasporangium calvum DSM 43043 chromosome, complete genomehypothetical protein2e-22107
NC_018532:166468:2135532135532152441692Arthrobacter sp. Rue61a plasmid p232, complete sequenceprotein, TraG family3e-22107
NC_010572:4585500:4602089460208946037051617Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-1997.4
NC_013947:5747385:5766988576698857688231836Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeType IV secretory pathway VirD4 protein-like protein7e-1892.4
NC_016943:1422926:1427177142717714290901914Blastococcus saxobsidens DD2, complete genomehypothetical protein3e-1790.5
NC_019673:2051363:2049600204960020513661767Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein9e-1788.6
NC_013757:729986:7311967311967331061911Geodermatophilus obscurus DSM 43160, complete genomeType IV secretory pathway VirD4 protein-like protein3e-1584
NC_014549:14000:3245132451342471797Arthrobacter arilaitensis Re117 plasmid pRE117-1, completeTraG-family bacterial conjugation protein1e-1481.6
NC_018524:3075000:3087918308791830893121395Nocardiopsis alba ATCC BAA-2165 chromosome, complete genometype IV secretory system Conjugative DNA transfer family protein2e-1481.3
NC_012803:3691:1490314903166871785Micrococcus luteus NCTC 2665, complete genomehypothetical protein2e-1480.9
NC_017955:3670670:3721026372102637225311506Modestobacter marinus, complete genometype IV secretory pathway VirD4-like8e-1479
NC_017955:3057592:3100018310001831015291512Modestobacter marinus, complete genomeconjugative transfer gene complex protein1e-1378.2
NC_008713:259791:2853822853822871271746Arthrobacter aurescens TC1 plasmid TC2, complete sequenceputative traG-family protein1e-1275.5
NC_013929:3722867:3736306373630637381021797Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-1170.9
NC_013929:2536255:2542598254259825443911794Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-1170.9
NC_003888:7561923:7621458762145876231851728Streptomyces coelicolor A3(2), complete genomehypothetical protein5e-1169.7
NC_013729:2258582:2274288227428822766632376Kribbella flavida DSM 17836, complete genomeType IV secretory pathway VirD4 protein-like protein2e-0964.7
NC_018750:6070260:6092603609260360943991797Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein7e-0962.8
NC_014158:233733:2719842719842737351752Tsukamurella paurometabola DSM 20162 chromosome, complete genomeconjugal transfer protein1e-0862