Pre_GI: BLASTP Hits

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Query: NC_003888:4523500:4536527 Streptomyces coelicolor A3(2), complete genome

Start: 4536527, End: 4537897, Length: 1371

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010572:4585500:4598066459806645993851320Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative two-component system sensor kinase1e-72273
NC_013595:1851226:1862814186281418639681155Streptosporangium roseum DSM 43021, complete genomeHistidine kinase1e-37157
NC_009380:4729340:4748874474887447500971224Salinispora tropica CNB-440 chromosome, complete genomehistidine kinase, dimerisation and phosphoacceptor region2e-34147
NC_014550:1581812:1616675161667516179071233Arthrobacter arilaitensis Re117, complete genomeputative signal transduction histidine kinase7e-32138
NC_016582:6811273:6826277682627768277011425Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative two-component system sensor kinase3e-30133
NC_013595:3541012:3541674354167435427921119Streptosporangium roseum DSM 43021, complete genomeputative two-component system sensor kinase2e-28127
NC_003888:4031299:4032042403204240333671326Streptomyces coelicolor A3(2), complete genometwo-component system sensor kinase2e-26120
NC_018868:1271742:1274986127498612762121227Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehistidine kinase2e-24113
NC_015953:2059083:2077758207775820791791422Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase6e-24112
NC_008699:1067855:1070611107061110717891179Nocardioides sp. JS614, complete genomehistidine kinase, dimerisation and phosphoacceptor region1e-22108
NC_003888:7866148:7876048787604878772411194Streptomyces coelicolor A3(2), complete genomeprobable two-component system sensor kinase1e-22107
NC_011886:4336417:4361861436186143632371377Arthrobacter chlorophenolicus A6, complete genomehistidine kinase1e-22107
NC_016801:394400:4055124055124067381227Corynebacterium diphtheriae C7 (beta) chromosome, complete genometwo-component system sensor histidine kinase3e-22106
NC_017955:2494640:2513712251371225148511140Modestobacter marinus, complete genometwo component integral membrane sensor signal transduction histidine kinase1e-21105
NC_016111:2257166:2259667225966722609771311Streptomyces cattleya NRRL 8057, complete genometwo-component system sensor kinase1e-21104
NC_013595:196493:1988221988222000961275Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein4e-21103
NC_013947:656140:6795396795396806811143Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehistidine kinase3e-21103
NC_013929:1584906:1603147160314716041541008Streptomyces scabiei 87.22 chromosome, complete genometwo component sensor kinase1e-20101
NC_015957:8569721:8590806859080685921791374Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative signal transduction histidine kinase1e-20101
NC_021177:2185898:2204422220442222057951374Streptomyces fulvissimus DSM 40593, complete genomeIntegral membrane sensor signal transduction histidine kinase2e-20100
NC_016109:3591401:3591401359140135925191119Kitasatospora setae KM-6054, complete genomeputative two-component system sensor kinase5e-2099.4
NC_013131:8029621:8051812805181280530111200Catenulispora acidiphila DSM 44928, complete genomehistidine kinase1e-1997.8
NC_013739:717352:7210357210357221741140Conexibacter woesei DSM 14684, complete genomeintegral membrane sensor signal transduction histidine kinase3e-1997.1
NC_016582:6811273:6815992681599268171731182Streptomyces bingchenggensis BCW-1 chromosome, complete genomehistidine kinase3e-1996.7
NC_009921:8648994:8669977866997786714671491Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase2e-1893.6
NC_009921:3854969:3885817388581738870341218Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase5e-1892.8
NC_010162:7620000:7628585762858576297421158Sorangium cellulosum 'So ce 56', complete genomeputative two-component system sensor kinase1e-1791.7
NC_018750:6237875:6251329625132962524501122Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system sensor kinase1e-1791.3
NC_013947:1956923:1976270197627019774211152Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehistidine kinase4e-1789.7
NC_013169:2423863:2453428245342824546421215Kytococcus sedentarius DSM 20547, complete genomesignal transduction histidine kinase9e-1788.6
NC_013235:593289:6067186067186078661149Nakamurella multipartita DSM 44233, complete genomehistidine kinase9e-1788.6
NC_014391:3445672:3461080346108034622341155Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehistidine kinase dimerization and phosphoacceptor region1e-1687.8
NC_013929:6008072:6016109601610960174521344Streptomyces scabiei 87.22 chromosome, complete genometwo-component system sensor kinase3e-1687
NC_015957:5310000:5318013531801353192151203Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative signal transduction histidine kinase3e-1687
NC_016114:4333390:4341936434193643432521317Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehistidine kinase dimerization and phosphoacceptor region3e-1686.7
NC_013929:1119384:1127261112726111284631203Streptomyces scabiei 87.22 chromosome, complete genometwo-component system sensor kinase4e-1686.3
NC_013169:1759900:1776071177607117774201350Kytococcus sedentarius DSM 20547, complete genomesignal transduction histidine kinase7e-1685.5
NC_014210:5752651:5758783575878357599311149Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integral membrane sensor signal transduction histidine kinase9e-1685.1
NC_013757:2046000:2057159205715920583281170Geodermatophilus obscurus DSM 43160, complete genomehistidine kinase dimerization and phosphoacceptor region9e-1685.1
NC_009921:3999040:4016718401671840180551338Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase1e-1584.7
NC_016943:1314500:1329748132974813308811134Blastococcus saxobsidens DD2, complete genomeTwo component signal transduction histidine kinase1e-1584.7
NC_015514:3911655:3936688393668839379621275Cellulomonas fimi ATCC 484 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase1e-1584.7
NC_011593:1830500:1846652184665218490302379Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,integral membrane sensor signal transduction histidine kinase2e-1584.3
NC_017219:1830353:1846433184643318488202388Bifidobacterium longum subsp. infantis ATCC 15697, complete genometwo-component sensor kinase2e-1584.3
NC_009953:1831000:1831031183103118323081278Salinispora arenicola CNS-205 chromosome, complete genomehistidine kinase2e-1584
NC_017955:3731480:3744254374425437455401287Modestobacter marinus, complete genometwo-component integral membrane sensor signal transduction histidine kinase2e-1584
NC_009921:4399000:4412349441234944136831335Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase4e-1583.2
NC_017218:1166844:1186511118651111889672457Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomehistidine kinase5e-1582.8
NC_018750:5399316:5414659541465954158551197Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system sensor kinase1e-1378.6
NC_016113:11500:3003030030312051176Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencesensor kinase1e-1378.6
NC_008148:1567703:1570582157058215718051224Rubrobacter xylanophilus DSM 9941, complete genomeperiplasmic sensor signal transduction histidine kinase1e-1378.2
NC_013595:5176000:5197494519749451986931200Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein4e-1376.6
NC_013521:2193203:2196804219680421980241221Sanguibacter keddieii DSM 10542, complete genomesignal transduction histidine kinase3e-1376.6
NC_019673:1988853:2012554201255420136751122Saccharothrix espanaensis DSM 44229 complete genomeputative histidine kinase4e-1376.3
NC_010407:2406113:2421488242148824229241437Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative two-component system sensor kinase1e-1274.7
NC_021177:5697210:5720678572067857218771200Streptomyces fulvissimus DSM 40593, complete genomeSensor-histidine kinase2e-1273.9
NC_014210:2372813:2394666239466623958471182Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integral membrane sensor signal transduction histidine kinase3e-1273.2
NC_013595:606096:6196566196566207741119Streptosporangium roseum DSM 43021, complete genomeputative two-component system sensor kinase6e-1272.4
NC_018750:3741581:3758691375869137598181128Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system sensor kinase2e-1170.9
NC_016109:5543112:5559633555963355608381206Kitasatospora setae KM-6054, complete genomeputative two-component system sensor kinase3e-1170.1
NC_010571:2041277:2067947206794720691041158Opitutus terrae PB90-1, complete genomeintegral membrane sensor signal transduction histidine kinase5e-1169.3
NC_008596:2873675:2875590287559028767471158Mycobacterium smegmatis str. MC2 155, complete genomesensor kinase5e-1169.3
NC_018524:4988810:5020000502000050210461047Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehistidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein6e-1169.3
NC_009664:4377777:4397837439783743989971161Kineococcus radiotolerans SRS30216, complete genomeintegral membrane sensor signal transduction histidine kinase6e-1169.3
NC_016943:3270308:3319588331958833208951308Blastococcus saxobsidens DD2, complete genomeputative two-component system sensor kinase (modular protein)1e-1068.2
NC_013169:612456:6148136148136161291317Kytococcus sedentarius DSM 20547, complete genomehistidine kinase2e-1067.4
NC_018720:993869:1013685101368510149651281Bifidobacterium asteroides PRL2011 chromosome, complete genometwo-component sensor kinase3e-1067
NC_013729:4835452:4840812484081248419781167Kribbella flavida DSM 17836, complete genomehistidine kinase6e-1065.9
NC_009664:4347718:4349218434921843505791362Kineococcus radiotolerans SRS30216, complete genomeintegral membrane sensor signal transduction histidine kinase6e-1065.9
NC_018720:2000028:2004256200425620055211266Bifidobacterium asteroides PRL2011 chromosome, complete genomeputative two component sensor kinase6e-1065.9
NC_013947:656140:6593696593696605801212Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehistidine kinase7e-1065.5
NC_017317:51428:5721457214582241011Corynebacterium ulcerans 809 chromosome, complete genomeoxygen sensor histidine kinase8e-1065.5
NC_015953:4746983:4769152476915247703781227Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase1e-0965.1
NC_020064:79422:1045061045061060381533Serratia marcescens FGI94, complete genomesignal transduction histidine kinase, glucose-6-phosphate specific4e-0963.2
NC_012669:96966:1108371108371120181182Beutenbergia cavernae DSM 12333, complete genomehistidine kinase9e-0962
NC_014210:2597000:2616442261644226179321491Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integral membrane sensor signal transduction histidine kinase1e-0861.6
NC_010725:4035397:4074774407477440761921419Methylobacterium populi BJ001, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0861.2
NC_009664:4423829:4492004449200444931791176Kineococcus radiotolerans SRS30216, complete genomeintegral membrane sensor signal transduction histidine kinase4e-0859.7
NC_013235:508585:5288685288685305411674Nakamurella multipartita DSM 44233, complete genomehistidine kinase5e-0859.3
NC_007907:4692336:4711510471151047129581449Desulfitobacterium hafniense Y51, complete genomehypothetical protein6e-0859.3
NC_011593:533884:5425095425095438821374Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,histidine kinase, dimerisation and phosphoacceptor region1e-0758.5
NC_017219:538864:5423025423025436631362Bifidobacterium longum subsp. infantis ATCC 15697, complete genomeputative two-component sensor kinase1e-0758.5
NC_015953:6212366:6240356624035662415821227Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase9e-0858.5
NC_015703:3325780:333229833322983333104807Runella slithyformis DSM 19594 chromosome, complete genomeputative signal transduction histidine kinase1e-0758.2
NC_018524:4848154:4871272487127248725011230Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehistidine kinase family protein2e-0757.8
NC_011593:1202726:1228151122815112295361386Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,integral membrane sensor signal transduction histidine kinase3e-0756.6
NC_017219:1203500:1228038122803812293271290Bifidobacterium longum subsp. infantis ATCC 15697, complete genomeputative two-component sensor kinase3e-0756.6
NC_004337:3590323:3901294390129439027961503Shigella flexneri 2a str. 301, complete genomesensor histidine protein kinase, phosphorylates UhpA5e-0756.2
NC_009664:4423829:4461207446120744623971191Kineococcus radiotolerans SRS30216, complete genomeintegral membrane sensor signal transduction histidine kinase5e-0756.2
NC_021066:4177217:4177217417721741787191503Raoultella ornithinolytica B6, complete genomesensory histidine kinase UhpB5e-0756.2
NC_011080:3941909:3959636395963639611381503Salmonella enterica subsp. enterica serovar Newport str. SL254,sensor protein UhpB5e-0756.2
NC_011601:4096427:4148861414886141503631503Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomesensory histidine kinase UhpB5e-0756.2
NC_011149:3895921:3913564391356439150661503Salmonella enterica subsp. enterica serovar Agona str. SL483,sensor histidine kinase UhpB6e-0755.8
NC_008148:2498000:2526117252611725280391923Rubrobacter xylanophilus DSM 9941, complete genomemulti-sensor signal transduction histidine kinase6e-0755.8
NC_011094:3853036:3870764387076438722661503Salmonella enterica subsp. enterica serovar Schwarzengrund strsensory histidine kinase UhpB6e-0755.8
NC_016857:3993864:4010365401036540118671503Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74sensory histidine kinase UhpB9e-0755.5
NC_016856:3985597:4002744400274440042461503Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssensory histidine kinase UhpB9e-0755.5
NC_016810:3993863:4010364401036440118661503Salmonella enterica subsp. enterica serovar Typhimurium strtwo-component system sensor histidine kinase9e-0755.5
NC_003197:3971905:3989052398905239905541503Salmonella typhimurium LT2, complete genomesensory histidine kinase9e-0755.5
NC_011083:3985618:4003261400326140047631503Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,sensor histidine kinase UhpB9e-0755.5
NC_012125:3905782:3923510392351039250121503Salmonella enterica subsp. enterica serovar Paratyphi C strainsensory histidine kinase UhpB9e-0755.5
NC_016860:4055117:4094163409416340956651503Salmonella enterica subsp. enterica serovar Typhimurium strsensor kinase UhpB9e-0755.5
NC_016863:3933848:3950351395035139518531503Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1sensory histidine kinase UhpB9e-0755.5
NC_017046:3991551:4009192400919240106941503Salmonella enterica subsp. enterica serovar Typhimurium str. 798two-component system sensor histidine kinase9e-0755.5
NC_004631:3841975:3843732384373238452341503Salmonella enterica subsp. enterica serovar Typhi Ty2, completetwo-component system sensor histidine kinase9e-0755.5
NC_003198:3855157:3858242385824238597441503Salmonella enterica subsp. enterica serovar Typhi str. CT18,two-component system sensor histidine kinase9e-0755.5
NC_010627:463646:4645854645854662101626Burkholderia phymatum STM815 plasmid pBPHY02, complete sequencemulti-sensor signal transduction histidine kinase9e-0755.5
NC_010102:3919999:3937146393714639386481503Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-0755.5
NC_006511:3759550:3777184377718437786741491Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC8e-0755.5
NC_006905:3913988:3928719392871939302601542Salmonella enterica subsp. enterica serovar Choleraesuis strsensory histidine kinase in two-component regulatory sytem with UhpA8e-0755.5
NC_015953:46732:8172181721829291209Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase1e-0655.1
NC_014958:1335650:1350121135012113512871167Deinococcus maricopensis DSM 21211 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase1e-0655.1
NC_016582:5987039:5993878599387859950801203Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative two-component system sensor kinase1e-0654.7
NC_017219:538864:5519915519915533161326Bifidobacterium longum subsp. infantis ATCC 15697, complete genomeputative two-component sensor kinase1e-0654.7
NC_011593:533884:5521985521985535231326Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,histidine kinase, dimerisation and phosphoacceptor region1e-0654.7
NC_014958:514225:5189025189025203411440Deinococcus maricopensis DSM 21211 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase3e-0653.5
NC_017955:3731480:375749137574913758264774Modestobacter marinus, complete genometwo component integral membrane signal transduction histidine kinase1e-0552