Pre_GI: BLASTP Hits

Some Help

Query: NC_003888:4523500:4529468 Streptomyces coelicolor A3(2), complete genome

Start: 4529468, End: 4530016, Length: 549

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016582:7033000:703691570369157037463549Streptomyces bingchenggensis BCW-1 chromosome, complete genomeMarR family transcriptional regulator2e-82304
NC_010572:4585500:459085645908564591413558Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative MarR-family transcriptional regulator2e-78291
NC_016111:2257166:227261322726132273110498Streptomyces cattleya NRRL 8057, complete genomeHTH-type transcriptional regulator pecS2e-1375.5
NC_008321:3189974:320949732094973210033537Shewanella sp. MR-4, complete genometranscriptional regulator, MarR family5e-1270.9
NC_008711:1224164:123368312336831234186504Arthrobacter aurescens TC1, complete genomeputative transcriptional regulator, MarR family1e-1169.3
NC_010501:4989455:499041949904194990925507Pseudomonas putida W619, complete genometranscriptional regulator, MarR family2e-1168.6
NC_009925:5957806:596064059606405961131492Acaryochloris marina MBIC11017, complete genometranscriptional regulator, MarR family4e-1167.8
NC_007645:3712272:372537637253763725885510Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator1e-0962.4
NC_009664:1195630:121911012191101219676567Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, MarR family3e-0961.6
NC_014311:3348102:336288433628843363396513Ralstonia solanacearum PSI07 chromosome, complete genomeMarR family transcriptional regulator3e-0961.2
NC_010623:1961685:196625319662531966864612Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, MarR family8e-0960.1
NC_016628:763833:791320791320791802483Vibrio furnissii NCTC 11218 chromosome 2, complete sequencetranscriptional regulator, MarR family protein1e-0859.7
NC_014391:6000834:601967660196766020215540Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeregulatory protein MarR1e-0859.7
NC_009725:692237:719938719938720450513Bacillus amyloliquefaciens FZB42, complete genomeYetL1e-0859.3
NC_014307:3240430:325987732598773260389513Ralstonia solanacearum CFBP2957 chromosome, complete genomeMarR family transcriptional regulator3e-0858.2
NC_014963:1951108:196689019668901967690801Terriglobus saanensis SP1PR4 chromosome, complete genomeregulatory protein MarR3e-0858.2
NC_015711:3122000:314673031467303147248519Myxococcus fulvus HW-1 chromosome, complete genomeMarR family transcriptional regulator5e-0857.4
NC_011283:819970:835107835107835613507Klebsiella pneumoniae 342 chromosome, complete genomeMarR family transcriptional regulator2e-0755.8
NC_012721:109500:129270129270129809540Burkholderia glumae BGR1 chromosome 2, complete genomeTranscriptional regulator, MarR family protein3e-0754.7
NC_016111:6175975:617936861793686179952585Streptomyces cattleya NRRL 8057, complete genomeMarR family transcriptional regulator1e-0653.1
NC_006576:414696:427513427513428013501Synechococcus elongatus PCC 6301, complete genometranscriptional regulator1e-0652.8
NC_007604:1183497:119279211927921193292501Synechococcus elongatus PCC 7942, complete genometranscriptional regulator, MarR family1e-0652.8
NC_007356:1221500:124168612416861242198513Dehalococcoides sp. CBDB1, complete genometranscriptional regulator, MarR family1e-0652.4
NC_016745:123772:145693145693146214522Oceanimonas sp. GK1 chromosome, complete genomeMarR family transcriptional regulator1e-0652.4
NC_017188:3900951:390416139041613904595435Bacillus amyloliquefaciens TA208 chromosome, complete genomeTranscriptional regulator YdgJ2e-0652
NC_017191:3901914:390585339058533906287435Bacillus amyloliquefaciens XH7 chromosome, complete genomeHTH-type transcriptional regulator2e-0652
NC_015976:814922:834420834420834932513Sphingobium sp. SYK-6, complete genomeMarR family transcriptional regulator4e-0650.8
NC_014210:2372813:240736024073602407845486Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, MarR family5e-0650.8
NC_019842:3921424:392544939254493925883435Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,HTH-type transcriptional regulator6e-0650.4
NC_020410:3868573:387268538726853873119435Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative transcriptional regulator (MarR family)6e-0650.4
NC_011979:773673:795342795342795818477Geobacter sp. FRC-32, complete genometranscriptional regulator, MarR family7e-0650.1
NC_020272:20435:382113821138645435Bacillus amyloliquefaciens IT-45, complete genomeHTH-type transcriptional regulator9e-0650.1