Pre_GI: BLASTP Hits

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Query: NC_003888:4251867:4283316 Streptomyces coelicolor A3(2), complete genome

Start: 4283316, End: 4285007, Length: 1692

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016114:3655005:3671605367160536732961692Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein0693
NC_015953:3684065:3703610370361037053071698Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein0679
NC_003155:5253923:5273498527349852752191722Streptomyces avermitilis MA-4680, complete genomehypothetical protein0664
NC_013929:5135285:5152330515233051540961767Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein0657
NC_021177:4041915:4041915404191540436601746Streptomyces fulvissimus DSM 40593, complete genomeSerine/threonine protein kinase5e-154545
NC_007333:3626510:3631413363141336329301518Thermobifida fusca YX, complete genomehypothetical protein2e-45184
NC_014210:5752651:5754796575479657564361641Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,coagulation factor 5/8 type domain protein3e-26120
NC_014151:4106624:4106624410662441084141791Cellulomonas flavigena DSM 20109 chromosome, complete genomehypothetical protein2e-1584.7
NC_008705:27434:5444054440563111872Mycobacterium sp. KMS, complete genomeconserved hypothetical protein1e-0758.5
NC_008146:20047:4710047100489711872Mycobacterium sp. MCS, complete genomehypothetical protein1e-0758.5
NC_008541:4679022:4683558468355846851771620Arthrobacter sp. FB24 chromosome 1, complete sequencehypothetical protein4e-0653.5