Pre_GI: BLASTP Hits

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Query: NC_003888:4031299:4047138 Streptomyces coelicolor A3(2), complete genome

Start: 4047138, End: 4048256, Length: 1119

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003155:2730469:2734874273487427359831110Streptomyces avermitilis MA-4680, complete genomeABC transporter solute-binding protein1e-115416
NC_003888:6568000:6589575658957565906901116Streptomyces coelicolor A3(2), complete genomesolute-binding protein2e-111402
NC_010572:1748668:1753166175316617542781113Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ABC transporter solute-binding protein3e-110398
NC_016114:1435436:1439779143977914408881110Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeABC transporter substrate-binding protein2e-109395
NC_015953:5908467:5922472592247259235811110Streptomyces sp. SirexAA-E chromosome, complete genomeputative ABC transporter solute-binding protein2e-108392
NC_021177:6662668:6676348667634866774601113Streptomyces fulvissimus DSM 40593, complete genomeSolute-binding protein2e-107389
NC_013929:2375613:2381873238187323829641092Streptomyces scabiei 87.22 chromosome, complete genomesolute-binding protein5e-78291
NC_018750:6315802:6332963633296363340271065Streptomyces venezuelae ATCC 10712, complete genomeL-arabinose-binding periplasmic protein precursor AraF7e-68258
NC_013739:5705325:5709242570924257103841143Conexibacter woesei DSM 14684, complete genomeputative sugar ABC transporter, substrate- binding protein1e-61236
NC_020908:2788852:2794694279469427957311038Octadecabacter arcticus 238, complete genomeputative sugar ABC transporter extracellular solute-binding protein5e-42171
NC_013510:3117837:3122280312228031233561077Thermomonospora curvata DSM 43183, complete genomeD-xylose-binding periplasmic ABC transporter protein2e-39163
NC_019897:905185:9067379067379078701134Thermobacillus composti KWC4 chromosome, complete genomexylose ABC transporter substrate-binding protein2e-38160
NC_008800:4488112:450847545084754509470996Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,D-xylose transporter subunit XylF3e-38159
NC_015224:4426167:444330844433084444303996Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,D-xylose transporter subunit XylF3e-37155
NC_017160:4508000:452561245256124526607996Yersinia pestis D182038 chromosome, complete genomesugar-binding periplasmic protein5e-37155
NC_010465:62348:641306413065125996Yersinia pseudotuberculosis YPIII, complete genomeD-xylose ABC transporter, periplasmic substrate-binding protein5e-37155
NC_008150:4634695:464761846476184648613996Yersinia pestis Antiqua, complete genomesugar-binding periplasmic protein5e-37155
NC_007644:2099878:2109667210966721108121146Moorella thermoacetica ATCC 39073, complete genomePeriplasmic binding protein/LacI transcriptional regulator5e-36152
NC_006510:1901954:1910407191040719114981092Geobacillus kaustophilus HTA426, complete genomeD-xylose ABC transporter (substrate-binding protein)4e-36152
NC_004337:3590323:371279437127943713786993Shigella flexneri 2a str. 301, complete genomexylose binding protein9e-36151
NC_014837:33014:541895418955181993Pantoea sp. At-9b chromosome, complete genomeD-xylose ABC transporter periplasmic substrate-binding protein9e-34144
NC_014720:154111:2001632001632012181056Caldicellulosiruptor kronotskyensis 2002 chromosome, completed-xylose ABC transporter, periplasmic substrate-binding protein1e-33144
NC_014206:1694330:1704551170455117056301080Geobacillus sp. C56-T3 chromosome, complete genomeABC transporter substrate-binding protein2e-33143
NC_018000:4958637:4958637495863749596741038Sinorhizobium fredii USDA 257 chromosome, complete genomeD-xylose-binding periplasmic protein XylF2e-33143
NC_017323:1644000:1689453168945316904901038Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequenceD-xylose ABC transporter periplasmic substrate-binding protein4e-33142
NC_010320:143109:1535381535381546441107Thermoanaerobacter sp. X514 chromosome, complete genomeD-xylose ABC transporter periplasmic substrate-binding protein9e-33141
NC_014538:187747:1934041934041945101107Thermoanaerobacter sp. X513 chromosome, complete genomeD-xylose ABC transporter periplasmic substrate-binding protein9e-33141
NC_016593:2015321:2022353202235320234321080Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeABC-type xylose transport system periplasmic component-like protein2e-32140
NC_006510:1921541:1949018194901819500971080Geobacillus kaustophilus HTA426, complete genomeABC transporter (substrate-binding protein)2e-32140
NC_015732:30472:3538635386364261041Spirochaeta caldaria DSM 7334 chromosome, complete genomeD-xylose ABC transporter substrate-binding protein3e-29129
NC_017093:5410932:5418784541878454199111128Actinoplanes missouriensis 431, complete genomeputative ABC transporter substrate-binding protein3e-29129
NC_013406:1640787:1652061165206116534881428Paenibacillus sp. Y412MC10 chromosome, complete genomeABC-type xylose transport system periplasmic component-like protein5e-29128
NC_009328:1903291:1908123190812319091991077Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesugar ABC transporter ATP-binding protein1e-28127
NC_014310:2017927:2033622203362220346411020Ralstonia solanacearum PSI07 megaplasmid, complete sequenceD-xylose-binding periplasmic protein1e-28127
NC_014364:773500:7789777789777800801104Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeD-xylose ABC transporter, periplasmic substrate-binding protein1e-28127
NC_014931:6203872:6246643624664362476651023Variovorax paradoxus EPS chromosome, complete genomeD-xylose ABC transporter, periplasmic substrate-binding protein2e-28126
NC_015732:30472:3657136571376861116Spirochaeta caldaria DSM 7334 chromosome, complete genomeABC transporter2e-26120
NC_014960:1910202:1924235192423519253621128Anaerolinea thermophila UNI-1, complete genomeD-xylose ABC transporter substrate binding protein precursor2e-26120
NC_014483:1146682:1158577115857711596621086Paenibacillus polymyxa E681 chromosome, complete genomeMultiple sugar-binding periplasmic receptor chvE precursor1e-25117
NC_010407:151599:1577231577231588411119Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative extracellular sugar-binding protein4e-25115
NC_016641:2894899:2919994291999429210791086Paenibacillus terrae HPL-003 chromosome, complete genomeMultiple sugar-binding periplasmic receptor chvE5e-25115
NC_014829:1376253:1378907137890713800101104Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator1e-24114
NC_015519:1888917:1900190190019019012661077Tepidanaerobacter sp. Re1 chromosome, complete genomeperiplasmic sugar-binding protein1e-24114
NC_020291:5093138:5117428511742851185581131Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeABC-type xylose transport system, periplasmic component5e-24112
NC_015559:3511231:3526358352635835274521095Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeputative sugar uptake ABC transporter periplasmic solute-binding protein precursor1e-23111
NC_006087:28490:3409234092351621071Leifsonia xyli subsp. xyli str. CTCB07, complete genomemultiple sugar-binding periplasmic receptor1e-23110
NC_014720:154111:1948081948081958961089Caldicellulosiruptor kronotskyensis 2002 chromosome, completemonosaccharide-transporting atpase3e-22106
NC_019973:6102442:6130288613028861313581071Mesorhizobium australicum WSM2073, complete genomeABC-type xylose transport system, periplasmic component3e-22106
NC_013714:2350749:2353603235360323547601158Bifidobacterium dentium Bd1, complete genomeHypothetical secreted protein5e-22105
NC_018665:2163713:218209821820982183012915Exiguobacterium antarcticum B7 chromosome, complete genomePeriplasmic binding protein/LacI transcriptional regulator9e-1581.6
NC_010556:2328303:234419623441962345110915Exiguobacterium sibiricum 255-15, complete genomeperiplasmic binding protein/LacI transcriptional regulator3e-1479.7
NC_019897:905185:9079969079969090931098Thermobacillus composti KWC4 chromosome, complete genomexylose ABC transporter substrate-binding protein3e-1376.6
NC_014014:153837:1744281744281756241197Mycoplasma crocodyli MP145 chromosome, complete genome46 kDa surface antigen (p46)4e-1375.9
NC_008010:321561:329446329446329961516Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceD-xylose-binding periplasmic protein precursor2e-1273.9
NC_014364:815346:849154849154850110957Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator3e-1273.2
NC_013205:2332174:233878923387892339754966Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,periplasmic binding protein/LacI transcriptional regulator2e-1170.5
NC_014654:188835:189917189917190873957Halanaerobium sp. 'sapolanicus' chromosome, complete genomebifunctional carbohydrate binding and transport protein2e-1170.5
NC_015589:1468774:149197714919771492936960Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator3e-1066.6
NC_016113:11500:2570925709276581950Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceD-ribose ABC transporter permease5e-1065.9
NC_014650:2143033:215129121512912152265975Geobacillus sp. Y4.1MC1 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator6e-1065.5
NC_012785:638000:649402649402650280879Kosmotoga olearia TBF 19.5.1, complete genomeperiplasmic binding protein/LacI transcriptional regulator8e-1065.1
NC_006510:1921541:192787719278771928833957Geobacillus kaustophilus HTA426, complete genomesugar ABC transporter (sugar-binding protein)8e-1065.1
NC_014150:2617072:2636287263628726373151029Brachyspira murdochii DSM 12563 chromosome, complete genomegalactose/glucose-binding protein5e-0962.4
NC_012559:1635922:163844016384401639369930Laribacter hongkongensis HLHK9, complete genomeRbsB5e-0962.4
NC_011978:351465:3535183535183546421125Thermotoga neapolitana DSM 4359, complete genomeputative periplasmic binding protein1e-0861.6
NC_013216:4131563:4142715414271541440251311Desulfotomaculum acetoxidans DSM 771, complete genomeperiplasmic binding protein/LacI transcriptional regulator1e-0861.2
NC_014393:4612301:4624299462429946253601062Clostridium cellulovorans 743B chromosome, complete genomeputative galactoside ABC transporter1e-0860.8
NC_015566:2039431:206700920670092067938930Serratia sp. AS12 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator2e-0860.8
NC_008541:2037793:204289820428982043854957Arthrobacter sp. FB24 chromosome 1, complete sequenceperiplasmic binding protein/LacI transcriptional regulator5e-0858.9
NC_017954:934616:9372219372219382581038Thermogladius cellulolyticus 1633 chromosome, complete genomesugar ABC transporter periplasmic protein8e-0858.5
NC_020211:3535622:355672535567253557642918Serratia marcescens WW4, complete genomeribose ABC superfamily ATP binding cassette transporter, binding protein1e-0757.8
NC_021177:7159654:7177869717786971798241956Streptomyces fulvissimus DSM 40593, complete genomeD-ribose ABC transporter permease protein2e-0757.4
NC_013730:3863581:3873044387304438758662823Spirosoma linguale DSM 74, complete genometwo component transcriptional regulator, AraC family3e-0756.6
NC_014837:2709813:271725127172512718174924Pantoea sp. At-9b chromosome, complete genomeperiplasmic-binding protein/LacI transcriptional regulator4e-0756.2
NC_015161:1556766:156531915653191566305987Deinococcus proteolyticus MRP chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator7e-0755.5
NC_004578:3921199:393944239394423940371930Pseudomonas syringae pv. tomato str. DC3000, complete genomesugar ABC transporter, periplasmic sugar-binding protein7e-0755.5
NC_013929:6526745:653297265329726533718747Streptomyces scabiei 87.22 chromosome, complete genomecarbohydrate-binding protein1e-0654.7
NC_014393:4612301:4623049462304946240801032Clostridium cellulovorans 743B chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator9e-0754.7
NC_012586:425615:4387904387904398541065Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceribose ABC transporter, ribose-binding protein1e-0654.3
NC_003155:6444500:6444518644451864464641947Streptomyces avermitilis MA-4680, complete genomeD-ribose ABC transporter permease protein2e-0654.3
NC_015732:140087:147960147960148913954Spirochaeta caldaria DSM 7334 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator2e-0654.3
NC_013515:347671:374749374749375747999Streptobacillus moniliformis DSM 12112, complete genomeperiplasmic binding protein/LacI transcriptional regulator2e-0653.9
NC_014212:670996:681103681103681888786Meiothermus silvanus DSM 9946 chromosome, complete genomeABC-type xylose transport system periplasmic component2e-0653.5
NC_005810:3493607:350754635075463508502957Yersinia pestis biovar Microtus str. 91001, complete genomeputative periplasmic protein precursor2e-0653.5
NC_016771:701909:714612714612715538927Bacillus cereus NC7401, complete genomeribose ABC transporter substrate-binding protein3e-0653.1
NC_010184:661226:672022672022672945924Bacillus weihenstephanensis KBAB4, complete genomeMonosaccharide-transporting ATPase3e-0653.1
NC_016633:2655811:266334826633482664292945Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomesugar ABC transporter periplasmic protein4e-0652.8
NC_011969:726369:736252736252737178927Bacillus cereus Q1 chromosome, complete genomeribose ABC transporter substrate-binding protein5e-0652.4
NC_015519:1888917:1898959189895919000261068Tepidanaerobacter sp. Re1 chromosome, complete genomeD-galactose-binding periplasmic protein7e-0652
NC_008391:111217:118514118514119479966Burkholderia cepacia AMMD chromosome 2, complete sequenceperiplasmic binding protein/LacI transcriptional regulator7e-0652
NC_011772:647778:658732658732659658927Bacillus cereus G9842, complete genomeribose ABC transporter, ribose-binding protein7e-0652
NC_015519:801929:8102998102998113661068Tepidanaerobacter sp. Re1 chromosome, complete genomeD-galactose-binding periplasmic protein6e-0652
NC_018531:1991218:199227719922771993245969Arthrobacter sp. Rue61a chromosome, complete genomeD-ribose-binding protein RbsB6e-0652
NC_005810:1520000:1540098154009815412011104Yersinia pestis biovar Microtus str. 91001, complete genomegalactose-binding protein9e-0651.6