Pre_GI: BLASTP Hits

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Query: NC_003888:3602753:3622590 Streptomyces coelicolor A3(2), complete genome

Start: 3622590, End: 3623804, Length: 1215

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014210:397922:4163754163754175801206Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,sodium/hydrogen exchanger4e-58225
NC_016787:733685:7376917376917388901200Corynebacterium diphtheriae HC03 chromosome, complete genomeNa+/H+ antiporter-like protein2e-35150
NC_016786:720000:7240977240977252961200Corynebacterium diphtheriae HC01 chromosome, complete genomeNa+/H+ antiporter-like protein3e-35149
NC_016782:720000:7241287241287253271200Corynebacterium diphtheriae 241 chromosome, complete genomeNa+/H+ antiporter-like protein3e-35149
NC_013199:1966334:1987394198739419892231830Lactobacillus rhamnosus Lc 705, complete genomeKef-type K transport system, membrane component4e-1685.9
NC_016148:463840:4819894819894838841896Thermovirga lienii DSM 17291 chromosome, complete genometransporter, CPA2 family (TC 2.A.37)6e-1685.5
NC_015697:116000:1179191179191197781860Lactobacillus reuteri SD2112 chromosome, complete genomeCPA2 family monovalent cation:proton (H+) antiporter-28e-1582
NC_013198:394000:4647864647864659401155Lactobacillus rhamnosus GG, complete genomeNa /H antiporter NapA (inosine-dependent germination)1e-1068.2
NC_017192:683493:6894406894406905971158Arcobacter sp. L, complete genomesodium-hydrogen antiporter1e-0965.1
NC_012804:271459:2865452865452876871143Thermococcus gammatolerans EJ3, complete genomeNa+/H+ antiporter, napA type (napA)2e-0963.5
NC_015680:711753:7208047208047219461143Pyrococcus yayanosii CH1 chromosome, complete genomeNa+/H+ antiporter4e-0962.8
NC_009615:2039964:2042081204208120443692289Parabacteroides distasonis ATCC 8503 chromosome, complete genomecation/H+ antiporter6e-0962.4
NC_007955:1779222:1779222177922217803941173Methanococcoides burtonii DSM 6242, complete genomesodium/hydrogen exchanger1e-0861.2
NC_013926:829665:8308168308168324081593Aciduliprofundum boonei T469 chromosome, complete genomesodium/hydrogen exchanger3e-0860.1
NC_008609:3921113:3924156392415639258111656Pelobacter propionicus DSM 2379, complete genomesodium/hydrogen exchanger8e-0858.5
NC_009850:566755:5688475688475700041158Arcobacter butzleri RM4018, complete genomeprobable sodium/hydrogen antiporter1e-0757.8
NC_016605:50695:7339073390745621173Pediococcus claussenii ATCC BAA-344 chromosome, complete genomeproton antiporter-2 family protein3e-0756.6
NC_017378:1175639:1181291118129111824421152Helicobacter pylori Puno120 chromosome, complete genomeNa+/H+ antiporter8e-0755.1
NC_017379:1233482:1239138123913812402891152Helicobacter pylori Puno135 chromosome, complete genomeNa+/H+ antiporter1e-0654.7
NC_011333:1236730:1236730123673012378811152Helicobacter pylori G27 chromosome, complete genomeNa+/H+ antiporter1e-0654.7
NC_014166:2959688:2982393298239329835501158Arcobacter nitrofigilis DSM 7299 chromosome, complete genomesodium/hydrogen exchanger4e-0653.1