Pre_GI: BLASTP Hits

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Query: NC_003888:32134:46430 Streptomyces coelicolor A3(2), complete genome

Start: 46430, End: 47734, Length: 1305

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012467:1997484:2009046200904620103261281Streptococcus pneumoniae P1031, complete genometwin-arginine translocation pathway signal8e-87321
NC_010582:2091138:2102870210287021041741305Streptococcus pneumoniae CGSP14, complete genomehypothetical protein8e-87321
NC_013853:2048867:2054435205443520557151281Streptococcus mitis B6, complete genomehypothetical protein9e-87320
NC_016011:470908:4772774772774787101434Listeria ivanovii subsp. ivanovii PAM 55, complete genomehypothetical protein2e-86320
NC_012466:2008000:2017395201739520186751281Streptococcus pneumoniae JJA, complete genomehypothetical protein3e-86319
NC_011900:2107133:2117998211799821192781281Streptococcus pneumoniae ATCC 700669, complete genomehypothetical protein3e-86319
NC_014498:2127000:2134352213435221356321281Streptococcus pneumoniae 670-6B chromosome, complete genomehypothetical protein7e-86318
NC_012468:2069238:2078630207863020799101281Streptococcus pneumoniae 70585, complete genomehypothetical protein7e-86318
NC_003098:1925783:1935463193546319367671305Streptococcus pneumoniae R6, complete genomehypothetical protein1e-85317
NC_008533:1935500:1942965194296519442451281Streptococcus pneumoniae D39, complete genomehypothetical protein2e-85316
NC_015389:616430:6164306164306177191290Coriobacterium glomerans PW2 chromosome, complete genomeUncharacterized conserved protein UCP0288462e-84313
NC_017218:867550:8797838797838810811299Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomehypothetical protein1e-83310
NC_004663:3285526:3286743328674332881881446Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein8e-77288
NC_016610:726128:7278457278457293141470Tannerella forsythia ATCC 43037 chromosome, complete genomehypothetical protein1e-76287
NC_016609:6177651:6182389618238961838071419Niastella koreensis GR20-10 chromosome, complete genomehypothetical protein2e-72273
NC_014655:3141144:3150839315083931522421404Leadbetterella byssophila DSM 17132 chromosome, complete genomeuncharacterized conserved protein ucp0288463e-71269
NC_010688:1435694:1457758145775814592751518Xanthomonas campestris pv. campestris, complete genomeexported conserved hypothetical protein6e-68258
NC_007705:1828375:1830853183085318323161464Xanthomonas oryzae pv. oryzae MAFF 311018, complete genomehypothetical protein8e-66251
NC_010717:3256039:3271739327173932732021464Xanthomonas oryzae pv. oryzae PXO99A, complete genomehypothetical protein8e-66251
NC_006834:1849492:1851970185197018534331464Xanthomonas oryzae pv. oryzae KACC10331, complete genomehypothetical protein8e-66251
NC_017267:3333036:3346360334636033478231464Xanthomonas oryzae pv. oryzicola BLS256 chromosome, completehypothetical protein3e-65249