Pre_GI: BLASTP Hits

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Query: NC_003888:3138905:3147118 Streptomyces coelicolor A3(2), complete genome

Start: 3147118, End: 3147951, Length: 834

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016114:4614924:462923946292394629925687Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein8e-45180
NC_015953:2640500:264603926460392646761723Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein1e-44179
NC_010572:5445081:545944054594405460174735Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein8e-44177
NC_016582:8031000:804315980431598043935777Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein1e-41169
NC_008596:5577270:558941555894155589999585Mycobacterium smegmatis str. MC2 155, complete genomehypothetical protein2e-28126
NC_013235:2129982:213256721325672133220654Nakamurella multipartita DSM 44233, complete genomeprotein of unknown function DUF17071e-22106
NC_013595:5176000:517607951760795176669591Streptosporangium roseum DSM 43021, complete genomehypothetical protein9e-1684.3
NC_004369:531579:552055552055552855801Corynebacterium efficiens YS-314, complete genomehypothetical protein4e-1478.6
NC_014165:597000:640130640130640570441Thermobispora bispora DSM 43833 chromosome, complete genomehypothetical protein1e-1377
NC_013595:1100230:112581711258171126272456Streptosporangium roseum DSM 43021, complete genomehypothetical protein3e-1375.9
NC_003155:5957657:597716059771605977861702Streptomyces avermitilis MA-4680, complete genomehypothetical protein2e-1066.2
NC_019673:8734993:874162487416248742139516Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-0756.6
NC_013093:7722436:773387277338727734348477Actinosynnema mirum DSM 43827, complete genomeprotein of unknown function DUF17077e-0754.7
NC_020302:2190500:219524121952412195849609Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein8e-0754.3