Pre_GI: BLASTP Hits

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Query: NC_003888:211748:223294 Streptomyces coelicolor A3(2), complete genome

Start: 223294, End: 224232, Length: 939

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016887:4343830:434953643495364350498963Nocardia cyriacigeorgica GUH-2, complete genomeputative Short-chain dehydrogenase/reductase9e-88323
NC_021177:2309615:232745723274572328410954Streptomyces fulvissimus DSM 40593, complete genomeShort chain dehydrogenase1e-87323
NC_014210:1625954:163991916399191640866948Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,short-chain dehydrogenase/reductase SDR2e-86319
NC_009664:4423829:450109845010984502078981Kineococcus radiotolerans SRS30216, complete genomeshort-chain dehydrogenase/reductase SDR6e-66251
NC_004463:1369165:136828713682871369225939Bradyrhizobium japonicum USDA 110, complete genomedehydrogenase2e-32139
NC_015379:3570658:357604135760413576991951Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative short chain dehydrogenase4e-31135
NC_010515:2449143:246325224632522464157906Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceshort-chain dehydrogenase/reductase SDR1e-29130
NC_010407:1114408:113309811330981134057960Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative oxidoreductase3e-28125
NC_010475:1563578:156504515650451565962918Synechococcus sp. PCC 7002, complete genomeoxidoreductase, short chain dehydrogenase/reductase family6e-28124
NC_007492:3180480:320861632086163209599984Pseudomonas fluorescens PfO-1, complete genomeShort-chain dehydrogenase/reductase SDR2e-27123
NC_013406:3583474:359950735995073600415909Paenibacillus sp. Y412MC10 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-25117
NC_015703:4483500:451396545139654514888924Runella slithyformis DSM 19594 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR8e-25114
NC_016609:701500:714889714889715845957Niastella koreensis GR20-10 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR8e-23107
NC_015434:666692:697773697773698678906Verrucosispora maris AB-18-032 chromosome, complete genomeshort-chain dehydrogenase/reductase sdr8e-22104
NC_005070:2308363:230913623091362310053918Synechococcus sp. WH 8102, complete genomeShort-chain dehydrogenase/reductase (SDR) superfamily2e-21103
NC_003296:1419992:141999214199921420912921Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE OXIDOREDUCTASE PROTEIN1e-20100
NC_014210:5048502:506555750655575066495939Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,short-chain dehydrogenase/reductase SDR2e-20100
NC_016114:7252500:727252672725267273431906Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR3e-1995.9
NC_014318:6539137:654020665402066541066861Amycolatopsis mediterranei U32 chromosome, complete genomeshort-chain dehydrogenase3e-1995.9
NC_015381:2859000:2888692288869228897111020Burkholderia gladioli BSR3 chromosome 1, complete sequenceshort-chain dehydrogenase/reductase SDR8e-1994.7
NC_017186:6539181:654025065402506541098849Amycolatopsis mediterranei S699 chromosome, complete genomeshort-chain dehydrogenase1e-1894
NC_011146:3426500:342666934266693427586918Geobacter bemidjiensis Bem, complete genomeshort-chain dehydrogenase/reductase SDR2e-1893.2
NC_012918:1444333:147487114748711475713843Geobacter sp. M21 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR3e-1892.8
NC_005071:523423:530611530611531513903Prochlorococcus marinus str. MIT 9313, complete genomeShort-chain dehydrogenase/reductase (SDR) superfamily7e-1891.3
NC_009380:3384737:339930533993053400222918Salinispora tropica CNB-440 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR9e-1890.9
NC_009254:442360:455734455734456645912Burkholderia vietnamiensis G4 chromosome 3, complete sequenceshort-chain dehydrogenase/reductase SDR5e-1788.6
NC_016582:3763476:377629737762973777244948Streptomyces bingchenggensis BCW-1 chromosome, complete genomedehydrogenase3e-1686.3
NC_013037:1072266:1078720107872010797451026Dyadobacter fermentans DSM 18053, complete genomeshort-chain dehydrogenase/reductase SDR5e-1685.1
NC_015957:5225903:523357652335765234457882Streptomyces violaceusniger Tu 4113 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR7e-1684.7
NC_012808:3972983:399450239945023995422921Methylobacterium extorquens AM1, complete genomeShort-chain dehydrogenase/reductase SDR1e-1584.3
NC_015167:1911758:191175819117581912702945Cellulophaga lytica DSM 7489 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-1584.3
NC_013061:2055000:2056381205638120574001020Pedobacter heparinus DSM 2366, complete genomeshort-chain dehydrogenase/reductase SDR2e-1583.2
NC_015957:3282183:328377132837713284580810Streptomyces violaceusniger Tu 4113 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR2e-1583.2
NC_003888:211748:228714228714229649936Streptomyces coelicolor A3(2), complete genomeoxidoreductase6e-1581.6
NC_010628:2418000:243025524302552431166912Nostoc punctiforme PCC 73102, complete genomeshort-chain dehydrogenase/reductase SDR8e-1581.3
NC_012489:3503632:350363235036323504630999Gemmatimonas aurantiaca T-27, complete genomeputative oxidoreductase2e-1376.6
NC_013235:682902:688792688792689772981Nakamurella multipartita DSM 44233, complete genomeshort-chain dehydrogenase/reductase SDR1e-1274.3
NC_011365:1171536:117581411758141176794981Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR2e-1273.2
NC_013595:4031947:403606740360674037023957Streptosporangium roseum DSM 43021, complete genomeoxidoreductase5e-1272
NC_009051:1118486:113313511331351133980846Methanoculleus marisnigri JR1, complete genomeshort-chain dehydrogenase/reductase SDR7e-1271.6
NC_008463:1293079:132801213280121328974963Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible dehydrogenase1e-1170.5
NC_015709:1769806:178661417866141787606993Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeshort-chain dehydrogenase/reductase SDR2e-1170.1
NC_014364:394899:400305400305401180876Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-1067.8
NC_011027:303000:329355329355330161807Chlorobaculum parvum NCIB 8327, complete genomeshort-chain dehydrogenase/reductase SDR2e-1067
NC_013939:1625491:163963116396311640470840Deferribacter desulfuricans SSM1, complete genomeshort-chain dehydrogenase/reductase SDR6e-1065.1
NC_008595:1951887:195825319582531959074822Mycobacterium avium 104, complete genomeretinol dehydrogenase 123e-0962.8
NC_009004:2477220:2497834249783424988531020Lactococcus lactis subsp. cremoris MG1363, complete genomehypothetical protein predicted by Glimmer/Critica4e-0962.4
NC_016906:4562874:456334245633424564334993Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative oxidoreductase, short chain dehydrogenase/reductase family7e-0961.6
NC_013169:513327:533666533666534490825Kytococcus sedentarius DSM 20547, complete genomeshort-chain dehydrogenase of unknown substrate specificity2e-0860.1
NC_016582:4983222:499673849967384997625888Streptomyces bingchenggensis BCW-1 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR8e-0754.7
NC_008595:2687245:270797627079762708665690Mycobacterium avium 104, complete genomeretinol dehydrogenase 126e-0652
NC_016947:1455744:146311314631131463934822Mycobacterium intracellulare MOTT-02 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR9e-0651.2