Pre_GI: BLASTP Hits

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Query: NC_003888:211748:212551 Streptomyces coelicolor A3(2), complete genome

Start: 212551, End: 213321, Length: 771

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009953:188000:212948212948213691744Salinispora arenicola CNS-205 chromosome, complete genomerespiratory nitrate reductase subunit gamma6e-50197
NC_009953:3552738:357447535744753575236762Salinispora arenicola CNS-205 chromosome, complete genomerespiratory nitrate reductase subunit gamma4e-48191
NC_017351:2489460:249326324932632493940678Staphylococcus aureus subsp. aureus 11819-97 chromosome, completerespiratory nitrate reductase subunit gamma7e-42171
NC_017342:857630:872953872953873630678Staphylococcus aureus subsp. aureus TCH60 chromosome, completerespiratory nitrate reductase subunit gamma7e-42171
NC_002952:2550500:255487425548742555551678Staphylococcus aureus subsp. aureus MRSA252, complete genomeputative nitrate reductase gamma chain7e-42171
NC_016887:3255500:327012432701243270861738Nocardia cyriacigeorgica GUH-2, complete genomeNitrate reductase gamma chain9e-42170
NC_003923:2460130:246333424633342464011678Staphylococcus aureus subsp. aureus MW2, complete genomenitrate reductase gamma chain2e-41169
NC_002953:2435667:244250024425002443177678Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative nitrate reductase gamma chain2e-41169
NC_002758:2515310:252094525209452521622678Staphylococcus aureus subsp. aureus Mu50, complete genomenitrate reductase gamma chain2e-41169
NC_012121:1894148:189565218956521896314663Staphylococcus carnosus subsp. carnosus TM300, complete genomeNarI protein2e-41169
NC_013450:2463271:246647524664752467152678Staphylococcus aureus subsp. aureus ED98, complete genomerespiratory nitrate reductase, gamma subunit2e-41169
NC_009782:2519379:252258325225832523260678Staphylococcus aureus subsp. aureus Mu3, complete genomenitrate reductase gamma chain2e-41169
NC_002745:2446722:244992624499262450603678Staphylococcus aureus subsp. aureus N315, complete genomenitrate reductase gamma chain2e-41169
NC_009632:2545419:255105425510542551731678Staphylococcus aureus subsp. aureus JH1 chromosome, completerespiratory nitrate reductase subunit gamma2e-41169
NC_017343:2367177:237281223728122373489678Staphylococcus aureus subsp. aureus ECT-R 2, complete genomerespiratory nitrate reductase subunit gamma2e-41169
NC_007622:2399347:240255024025502403227678Staphylococcus aureus RF122, complete genomenitrate reductase gamma chain2e-41169
NC_016928:2411486:241469024146902415367678Staphylococcus aureus subsp. aureus M013 chromosome, completerespiratory nitrate reductase subunit gamma2e-41169
NC_017337:2478877:248297324829732483650678Staphylococcus aureus subsp. aureus ED133 chromosome, completenitrate reductase gamma chain2e-41169
NC_017338:2456000:245859424585942459271678Staphylococcus aureus subsp. aureus JKD6159 chromosome, completerespiratory nitrate reductase subunit gamma2e-41169
NC_016941:2395502:239951623995162400193678Staphylococcus aureus subsp. aureus MSHR1132, complete genomeputative nitrate reductase gamma chain8e-41167
NC_007168:665284:680123680123680806684Staphylococcus haemolyticus JCSC1435, complete genomenitrate reductase gamma chain6e-41167
NC_004461:2002000:200618120061812006858678Staphylococcus epidermidis ATCC 12228, complete genomenitrate reductase gamma chain2e-40166
NC_007795:2455468:246110424611042461781678Staphylococcus aureus subsp. aureus NCTC 8325, complete genomerespiratory nitrate reductase, gamma subunit1e-40166
NC_002951:2448000:245043824504382451115678Staphylococcus aureus subsp. aureus COL, complete genomerespiratory nitrate reductase, gamma subunit1e-40166
NC_007793:2510801:251400525140052514682678Staphylococcus aureus subsp. aureus USA300, complete genomerespiratory nitrate reductase, gamma subunit1e-40166
NC_010079:2510951:251415525141552514832678Staphylococcus aureus subsp. aureus USA300_TCH1516, completenitrate reductase gamma subunit1e-40166
NC_009641:2513300:251893625189362519613678Staphylococcus aureus subsp. aureus str. Newman chromosome,respiratory nitrate reductase, gamma subunit1e-40166
NC_016912:2329113:233231723323172332994678Staphylococcus aureus subsp. aureus VC40 chromosome, completerespiratory nitrate reductase subunit gamma1e-40166
NC_017341:2544327:254753125475312548208678Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,respiratory nitrate reductase subunit gamma1e-40166
NC_017347:2511783:251498725149872515664678Staphylococcus aureus subsp. aureus T0131 chromosome, completeRespiratory nitrate reductase subunit gamma1e-40166
NC_017353:646195:659155659155659829675Staphylococcus lugdunensis N920143, complete genomeputative nitrate reductase gamma chain1e-38159
NC_006322:1994000:201091320109132011599687Bacillus licheniformis ATCC 14580, complete genomeNarI8e-36150
NC_016582:9422650:943004394300439430804762Streptomyces bingchenggensis BCW-1 chromosome, complete genomenitrate reductase gamma chain NarI32e-35149
NC_007406:857625:867182867182867859678Nitrobacter winogradskyi Nb-255, complete genomenitrate reductase gamma subunit4e-1582
NC_002516:4321000:433527643352764335959684Pseudomonas aeruginosa PAO1, complete genomerespiratory nitrate reductase gamma chain6e-1477.8
NC_008463:1188951:118969411896941190377684Pseudomonas aeruginosa UCBPP-PA14, complete genomerespiratory nitrate reductase gamma chain6e-1477.8
NC_008321:2649781:266610626661062666789684Shewanella sp. MR-4, complete genomerespiratory nitrate reductase, gamma subunit2e-1376.3
NC_008322:2716676:273406827340682734751684Shewanella sp. MR-7, complete genomerespiratory nitrate reductase, gamma subunit6e-1374.7
NC_014532:2146466:216243621624362163113678Halomonas elongata DSM 2581, complete genomerespiratory nitrate reductase, subunit gamma2e-1272.8
NC_014500:2688095:270421827042182704895678Dickeya dadantii 3937 chromosome, complete genomenitrate reductase 1, gamma (cytochrome b(NR)) subunit5e-1271.6
NC_011751:1714131:173155117315511732231681Escherichia coli UMN026 chromosome, complete genomenitrate reductase 2 subunit gamma1e-1170.5
NC_007606:1515403:151609515160951516775681Shigella dysenteriae Sd197, complete genomecryptic nitrate reductase 2, gamma subunit1e-1170.5
NC_016822:1818897:183697318369731837653681Shigella sonnei 53G, complete genomecryptic nitrate reductase 2 subunit gamma1e-1170.5
NC_007384:1737885:175898717589871759667681Shigella sonnei Ss046, complete genomecryptic nitrate reductase 2, gamma subunit1e-1170.5
NC_010473:1607646:162455616245561625236681Escherichia coli str. K-12 substr. DH10B, complete genomenitrate reductase 2 (NRZ), gamma subunit1e-1170.1
NC_000913:1517051:153396115339611534641681Escherichia coli K12, complete genomenitrate reductase 2 (NRZ), gamma subunit1e-1170.1
AC_000091:1521976:153765115376511538331681Escherichia coli W3110 DNA, complete genomenitrate reductase 2 (NRZ), gamma subunit1e-1170.1
NC_002655:2015000:203262020326202033300681Escherichia coli O157:H7 EDL933, complete genomecryptic nitrate reductase 2, gamma subunit1e-1170.1
NC_010468:2406387:240707924070792407759681Escherichia coli ATCC 8739, complete genomerespiratory nitrate reductase, gamma subunit1e-1170.1
NC_012759:1409086:142602014260201426700681Escherichia coli BW2952 chromosome, complete genomenitrate reductase 2 (NRZ), gamma subunit1e-1170.1
NC_013941:1857724:185963718596371860317681Escherichia coli O55:H7 str. CB9615 chromosome, complete genomenitrate reductase 2, gamma subunit1e-1170.1
NC_013592:2059138:206518320651832065860678Dickeya dadantii Ech586, complete genomerespiratory nitrate reductase, gamma subunit3e-1168.9
NC_015850:1947000:198029719802971980995699Acidithiobacillus caldus SM-1 chromosome, complete genomeRespiratory nitrate reductase subunit gamma5e-1168.2
NC_014973:2945942:294793229479322948597666Geobacter sp. M18 chromosome, complete genomerespiratory nitrate reductase subunit gamma1e-1067
NC_015968:2583721:260369426036942604371678Enterobacter asburiae LF7a chromosome, complete genomerespiratory nitrate reductase subunit gamma2e-1066.6
NC_010498:1700447:171737617173761718056681Escherichia coli SMS-3-5, complete genomerespiratory nitrate reductase 2, gamma subunit7e-0961.2
NC_011742:1528668:154666215466621547342681Escherichia coli S88 chromosome, complete genomenitrate reductase 2 (NRZ), gamma subunit1e-0860.5
NC_008563:1577879:159356915935691594249681Escherichia coli APEC O1, complete genomerespiratory nitrate reductase 2 gamma chain1e-0860.5
NC_007946:1586656:160465116046511605331681Escherichia coli UTI89, complete genomerespiratory nitrate reductase 2 gamma chain1e-0860.5
NC_011745:1581907:159785215978521598532681Escherichia coli ED1a chromosome, complete genomenitrate reductase 2 (NRZ) subunit gamma2e-0859.7
NC_004431:1713141:173070517307051731385681Escherichia coli CFT073, complete genomeRespiratory nitrate reductase 2 gamma chain2e-0859.7
NC_011750:1809943:181091618109161811596681Escherichia coli IAI39 chromosome, complete genomenitrate reductase 2 (NRZ) subunit gamma4e-0858.5
NC_013166:1409790:143064614306461431323678Kangiella koreensis DSM 16069, complete genomerespiratory nitrate reductase, gamma subunit2e-0756.2