Pre_GI: BLASTP Hits

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Query: NC_003888:211748:211748 Streptomyces coelicolor A3(2), complete genome

Start: 211748, End: 212551, Length: 804

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002655:2015000:203192820319282032623696Escherichia coli O157:H7 EDL933, complete genomecryptic nitrate reductase 2, delta subunit, assembly function6e-0651.6
NC_007384:1737885:175829517582951758990696Shigella sonnei Ss046, complete genomecryptic nitrate reductase 2, delta subunit, assembly function6e-0651.6
NC_009782:2519379:252325325232532523828576Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein3e-0755.5
NC_002745:2446722:245059624505962451171576Staphylococcus aureus subsp. aureus N315, complete genomehypothetical protein3e-0755.5
NC_014500:2688095:270489527048952705614720Dickeya dadantii 3937 chromosome, complete genomemolybdenum-cofactor-assembly chaperone subunit (subunit delta) of nitrate reductase 15e-1168.2
NC_006322:1994000:201159620115962012138543Bacillus licheniformis ATCC 14580, complete genomeNarJ5e-1478.2
NC_011750:1809943:181159318115931812288696Escherichia coli IAI39 chromosome, complete genomenitrate reductase 2 (NRZ) subunit delta7e-0651.2
NC_000913:1517051:153463815346381535333696Escherichia coli K12, complete genomenitrate reductase 2 (NRZ), delta subunit (assembly subunit)6e-0651.6
NC_012759:1409086:142669714266971427392696Escherichia coli BW2952 chromosome, complete genomenitrate reductase 2 (NRZ), delta subunit (assembly subunit)6e-0651.6
AC_000091:1521976:153832815383281539023696Escherichia coli W3110 DNA, complete genomenitrate reductase 2 (NRZ), delta subunit (assembly subunit)6e-0651.6
NC_010473:1607646:162523316252331625928696Escherichia coli str. K-12 substr. DH10B, complete genomenitrate reductase 2 (NRZ), delta subunit (assembly subunit)6e-0651.6
NC_016822:1818897:183628118362811836976696Shigella sonnei 53G, complete genomenitrate reductase 2 subunit delta6e-0651.6
NC_011751:1714131:173222817322281732923696Escherichia coli UMN026 chromosome, complete genomenitrate reductase 2 subunit delta (assembly subunit)6e-0651.6
NC_016582:9422650:942939994293999430046648Streptomyces bingchenggensis BCW-1 chromosome, complete genomenitrate reductase delta chain NarJ32e-1996.3
NC_010079:2510951:251482525148252515415591Staphylococcus aureus subsp. aureus USA300_TCH1516, completenitrate reductase delta subunit4e-0755.5
NC_009953:188000:212280212280212951672Salinispora arenicola CNS-205 chromosome, complete genomenitrate reductase molybdenum cofactor assembly chaperone1e-38160
NC_017351:2489460:249393324939332494508576Staphylococcus aureus subsp. aureus 11819-97 chromosome, completenitrate reductase molybdenum cofactor assembly chaperone8e-0754.3
NC_016887:3255500:327085832708583271547690Nocardia cyriacigeorgica GUH-2, complete genomeNitrate reductase molybdenum cofactor assembly chaperone4e-1995.1
NC_015968:2583721:260437126043712605081711Enterobacter asburiae LF7a chromosome, complete genomenitrate reductase molybdenum cofactor assembly chaperone4e-0962
NC_017338:2456000:245926424592642459839576Staphylococcus aureus subsp. aureus JKD6159 chromosome, completenitrate reductase molybdenum cofactor assembly chaperone3e-0755.5
NC_013592:2059138:206446420644642065183720Dickeya dadantii Ech586, complete genomenitrate reductase molybdenum cofactor assembly chaperone2e-1169.7
NC_010814:190673:190134190134190679546Geobacter lovleyi SZ, complete genomenitrate reductase molybdenum cofactor assembly chaperone3e-0755.8
NC_017341:2544327:254820125482012548776576Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,nitrate reductase molybdenum cofactor assembly chaperone3e-0755.5
NC_009632:2545419:255172425517242552299576Staphylococcus aureus subsp. aureus JH1 chromosome, completenitrate reductase molybdenum cofactor assembly chaperone3e-0755.5
NC_009953:3552738:357385535738553574478624Salinispora arenicola CNS-205 chromosome, complete genomenitrate reductase molybdenum cofactor assembly chaperone2e-23109
NC_017343:2367177:237348223734822374057576Staphylococcus aureus subsp. aureus ECT-R 2, complete genomenitrate reductase molybdenum cofactor assembly chaperone3e-0755.5
NC_010468:2406387:240638724063872407082696Escherichia coli ATCC 8739, complete genomenitrate reductase molybdenum cofactor assembly chaperone6e-0651.6
NC_010498:1700447:171668417166841717379696Escherichia coli SMS-3-5, complete genomenitrate reductase molybdenum cofactor assembly chaperone 26e-0651.6
NC_013941:1857724:186031418603141861009696Escherichia coli O55:H7 str. CB9615 chromosome, complete genomenitrate reductase molybdenum cofactor assembly chaperone 26e-0651.6
NC_017337:2478877:248364324836432484170528Staphylococcus aureus subsp. aureus ED133 chromosome, completenitrate reductase subunit delta3e-0755.8
NC_014532:2146466:216311021631102163889780Halomonas elongata DSM 2581, complete genomerepiratory nitrate reductase, subunit delta1e-0963.5
NC_014562:2563466:256274125627412563469729Pantoea vagans C9-1 chromosome, complete genomerespiratory nitrate reductase 1 delta chain3e-1169.3
NC_004431:1713141:173138217313821732077696Escherichia coli CFT073, complete genomeRespiratory nitrate reductase 2 delta chain6e-0651.6
NC_016614:1152500:116077411607741161496723Vibrio sp. EJY3 chromosome 2, complete sequencerespiratory nitrate reductase chaperone NarJ2e-0756.6
NC_002953:2435667:244317024431702443745576Staphylococcus aureus subsp. aureus MSSA476, complete genomerespiratory nitrate reductase delta chain3e-0755.8
NC_002952:2550500:255554425555442556119576Staphylococcus aureus subsp. aureus MRSA252, complete genomerespiratory nitrate reductase delta chain2e-0653.1
NC_017347:2511783:251565725156572516232576Staphylococcus aureus subsp. aureus T0131 chromosome, completeRespiratory nitrate reductase subunit delta3e-0755.5
NC_016928:2411486:241536024153602415935576Staphylococcus aureus subsp. aureus M013 chromosome, completerespiratory nitrate reductase subunit delta3e-0755.5
NC_017342:857630:872370872370872960591Staphylococcus aureus subsp. aureus TCH60 chromosome, completerespiratory nitrate reductase subunit delta2e-0653.1
NC_015850:1947000:197975519797551980300546Acidithiobacillus caldus SM-1 chromosome, complete genomeRespiratory nitrate reductase subunit delta6e-1168.2
NC_016912:2329113:233298723329872333562576Staphylococcus aureus subsp. aureus VC40 chromosome, completerespiratory nitrate reductase subunit delta3e-0755.5
NC_016002:2825017:282435928243592825027669Pseudogulbenkiania sp. NH8B, complete genomerespiratory nitrate reductase subunit delta NarJ1e-1170.1
NC_009641:2513300:251960625196062520196591Staphylococcus aureus subsp. aureus str. Newman chromosome,respiratory nitrate reductase, delta subunit4e-0755.5
NC_002951:2448000:245110824511082451698591Staphylococcus aureus subsp. aureus COL, complete genomerespiratory nitrate reductase, delta subunit4e-0755.5
NC_013450:2463271:246714524671452467735591Staphylococcus aureus subsp. aureus ED98, complete genomerespiratory nitrate reductase, delta subunit4e-0755.5
NC_007793:2510801:251467525146752515265591Staphylococcus aureus subsp. aureus USA300, complete genomerespiratory nitrate reductase, delta subunit4e-0755.5
NC_007795:2455468:246177424617742462364591Staphylococcus aureus subsp. aureus NCTC 8325, complete genomerespiratory nitrate reductase, delta subunit, putative4e-0755.5
NC_002758:2515310:252161525216152522190576Staphylococcus aureus subsp. aureus Mu50, complete genomesimilar to nitrate reductase delta chain3e-0755.5