Pre_GI: BLASTN Hits

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Query: NC_003366:842000 Clostridium perfringens str. 13, complete genome

Start: 842000, End: 860474, Length: 18475

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009922:2590317*2590317261009919783Alkaliphilus oremlandii OhILAs, complete genome5e-29137BLASTN svgBLASTP svg
NC_009922:1917271*1917271193756720297Alkaliphilus oremlandii OhILAs, complete genome3e-27131BLASTN svgBLASTP svg
NC_018704:43340243340245651923118Amphibacillus xylanus NBRC 15112, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_018704:81733*8173311606034328Amphibacillus xylanus NBRC 15112, complete genome3e-21111BLASTN svgBLASTP svg
NC_013171:228356*22835625488926534Anaerococcus prevotii DSM 20548, complete genome1e-20109BLASTN svgBLASTP svg
NC_011567:388358*38835841678028423Anoxybacillus flavithermus WK1, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_011567:2327870*2327870234959921730Anoxybacillus flavithermus WK1, complete genome1e-1075.8BLASTN svgBLASTP svg
UCMB5137:276121*27612129641620296Bacillus atrophaeus UCMB-51379e-0660BLASTN svgBLASTP svg
NC_014219:83888*8388810707623189Bacillus selenitireducens MLS10 chromosome, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_014976:1174430*1174430119919524766Bacillus subtilis BSn5 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_012225:1657248*1657248168304825801Brachyspira hyodysenteriae WA1, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_018607:135612*13561217740241791Brachyspira pilosicoli B2904 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_016012:1010405*1010405104317432770Candidatus Arthromitus sp. SFB-rat-Yit, complete genome8e-71276BLASTN svgBLASTP svg
NC_014355:139324*13932416175222429Candidatus Nitrospira defluvii, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_003030:15100001510000154543435435Clostridium acetobutylicum ATCC 824, complete genome3e-33151BLASTN svgBLASTP svg
NC_018664:3009166*3009166304846639301Clostridium acidurici 9a chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_018664:985689*985689100461118923Clostridium acidurici 9a chromosome, complete genome1e-23119BLASTN svgBLASTP svg
NC_012563:32881243288124330917721054Clostridium botulinum A2 str. Kyoto, complete genome4e-45190BLASTN svgBLASTP svg
NC_010520:31205003120500313949618997Clostridium botulinum A3 str. Loch Maree, complete genome4e-45190BLASTN svgBLASTP svg
NC_010674:11244311124431114553121101Clostridium botulinum B str. Eklund 17B, complete genome4e-91343BLASTN svgBLASTP svg
NC_010516:3845942*3845942386860822667Clostridium botulinum B1 str. Okra, complete genome1e-26129BLASTN svgBLASTP svg
NC_010723:10840001084000110630222303Clostridium botulinum E3 str. Alaska E43, complete genome5e-109402BLASTN svgBLASTP svg
NC_010723:173280*17328022135248073Clostridium botulinum E3 str. Alaska E43, complete genome3e-36161BLASTN svgBLASTP svg
NC_014393:3425694*3425694347141745724Clostridium cellulovorans 743B chromosome, complete genome4e-60240BLASTN svgBLASTP svg
NC_014393:1590893*1590893163877247880Clostridium cellulovorans 743B chromosome, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_009089:1*13459934599Clostridium difficile 630, complete genome4e-23117BLASTN svgBLASTP svg
NC_009089:117980*11798016311645137Clostridium difficile 630, complete genome7e-25123BLASTN svgBLASTP svg
NC_013316:1*14895548955Clostridium difficile R20291, complete genome4e-23117BLASTN svgBLASTP svg
NC_013316:120759*12075915711036352Clostridium difficile R20291, complete genome4e-23117BLASTN svgBLASTP svg
NC_015275:3594890*3594890363588740998Clostridium lentocellum DSM 5427 chromosome, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_014328:93839393839395781019418Clostridium ljungdahlii ATCC 49587 chromosome, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_008593:16314381631438165059619159Clostridium novyi NT, complete genome5e-32147BLASTN svgBLASTP svg
NC_008593:196257*19625723516638910Clostridium novyi NT, complete genome1e-51212BLASTN svgBLASTP svg
NC_021182:2059143*2059143208239023248Clostridium pasteurianum BC1, complete genome1e-44188BLASTN svgBLASTP svg
NC_008261:576923*57692359692520003Clostridium perfringens ATCC 13124, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_008261:2481500*2481500250521723718Clostridium perfringens ATCC 13124, complete genome9e-0660BLASTN svgBLASTP svg
NC_008261:12495951249595127220022606Clostridium perfringens ATCC 13124, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_008261:64678*6467810124836571Clostridium perfringens ATCC 13124, complete genome0718BLASTN svgBLASTP svg
NC_008262:24980002498000252144223443Clostridium perfringens SM101, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_008262:784878*78487882991045033Clostridium perfringens SM101, complete genome07279BLASTN svgBLASTP svg
NC_008262:2649289*2649289270467655388Clostridium perfringens SM101, complete genome6e-44186BLASTN svgBLASTP svg
NC_008262:17959141795914181428418371Clostridium perfringens SM101, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008262:101731*10173112528023550Clostridium perfringens SM101, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_003366:22667572266757228574918993Clostridium perfringens str. 13, complete genome9e-0660BLASTN svgBLASTP svg
NC_003366:64908*6490811367548768Clostridium perfringens str. 13, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010001:434803*43480346465129849Clostridium phytofermentans ISDg, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_014376:693820*69382071739923580Clostridium saccharolyticum WM1 chromosome, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_020291:117983*11798315068032698Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome8e-37163BLASTN svgBLASTP svg
NC_020291:12668851266885130737240488Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome4e-125456BLASTN svgBLASTP svg
NC_014614:35674635674640601049265Clostridium sticklandii, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_014614:2500301*2500301252659926299Clostridium sticklandii, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_004557:558500*55850058274124242Clostridium tetani E88, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004557:2078000*2078000210049622497Clostridium tetani E88, complete genome1e-23119BLASTN svgBLASTP svg
NC_018867:2063741*2063741208570321963Dehalobacter sp. CF chromosome, complete genome4e-20107BLASTN svgBLASTP svg
NC_018866:2033960*2033960205592221963Dehalobacter sp. DCA chromosome, complete genome4e-20107BLASTN svgBLASTP svg
NC_021184:1257722*1257722128104023319Desulfotomaculum gibsoniae DSM 7213, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_004668:3156247*3156247318179425548Enterococcus faecalis V583, complete genome6e-19103BLASTN svgBLASTP svg
NC_004668:241352*24135226701725666Enterococcus faecalis V583, complete genome6e-19103BLASTN svgBLASTP svg
NC_012778:403962*40396242480720846Eubacterium eligens ATCC 27750, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_012781:751757*75175777413422378Eubacterium rectale ATCC 33656, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_018665:71677*716779339521719Exiguobacterium antarcticum B7 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010556:71776*717769345921684Exiguobacterium sibiricum 255-15, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_012673:2152639*2152639217371821080Exiguobacterium sp. AT1b, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_010376:606000*60600062469418695Finegoldia magna ATCC 29328, complete genome1e-23119BLASTN svgBLASTP svg
NC_010376:186510*18651024309956590Finegoldia magna ATCC 29328, complete genome1e-23119BLASTN svgBLASTP svg
NC_003454:249304*24930426978820485Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete8e-37163BLASTN svgBLASTP svg
NC_019978:2036779*2036779205929022512Halobacteroides halobius DSM 5150, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_015428:700479*70047972176721289Lactobacillus buchneri NRRL B-30929 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_008526:2489196*2489196251110721912Lactobacillus casei ATCC 334, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_008530:1551356*1551356158801736662Lactobacillus gasseri ATCC 33323, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_005362:1651767*1651767169076238996Lactobacillus johnsonii NCC 533, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_009513:618000*61800064445826459Lactobacillus reuteri F275, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_015697:1814128*1814128185559941472Lactobacillus reuteri SD2112 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_013199:2536705*2536705255640419700Lactobacillus rhamnosus Lc 705, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_015975:267994*26799428810120108Lactobacillus ruminis ATCC 27782 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_007576:435713*43571345815822446Lactobacillus sakei subsp. sakei 23K, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_007576:1747662*1747662177048822827Lactobacillus sakei subsp. sakei 23K, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_007929:473500*47350049963926140Lactobacillus salivarius subsp. salivarius UCC118, complete genome6e-19103BLASTN svgBLASTP svg
NC_007929:210088*21008823862428537Lactobacillus salivarius subsp. salivarius UCC118, complete genome6e-19103BLASTN svgBLASTP svg
NC_015978:996933*996933102184824916Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete9e-1279.8BLASTN svgBLASTP svg
NC_004193:79588*7958811154731960Oceanobacillus iheyensis HTE831, complete genome6e-19103BLASTN svgBLASTP svg
NC_008525:664500*66450068827523776Pediococcus pentosaceus ATCC 25745, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_012121:1444633*1444633146884124209Staphylococcus carnosus subsp. carnosus TM300, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_012121:139741*13974118060640866Staphylococcus carnosus subsp. carnosus TM300, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_004461:74628474628477013223849Staphylococcus epidermidis ATCC 12228, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_002976:63879963879966264823850Staphylococcus epidermidis RP62A, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_020164:17842231784223180548221260Staphylococcus warneri SG1, complete genome9e-0660BLASTN svgBLASTP svg
NC_008022:35983359835835422372Streptococcus pyogenes MGAS10270, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006086:35599355998141045812Streptococcus pyogenes MGAS10394, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008024:35948359485945723510Streptococcus pyogenes MGAS10750, complete genome9e-0660BLASTN svgBLASTP svg
NC_008023:35663356635809922437Streptococcus pyogenes MGAS2096, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_007296:35661356616061124951Streptococcus pyogenes MGAS6180, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_003485:35971359715826622296Streptococcus pyogenes MGAS8232, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_008021:35661356615809922439Streptococcus pyogenes MGAS9429, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_015760:8914*89142721018297Streptococcus salivarius CCHSS3, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_015760:123929*12392914613122203Streptococcus salivarius CCHSS3, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_006449:5046*50463138626341Streptococcus thermophilus CNRZ1066, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_006449:121462*12146214259721136Streptococcus thermophilus CNRZ1066, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_006448:5046*50463135826313Streptococcus thermophilus LMG 18311, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_006448:121435*12143514257121137Streptococcus thermophilus LMG 18311, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_002754:537792*53779256054722756Sulfolobus solfataricus P2, complete genome9e-0660BLASTN svgBLASTP svg
NC_015172:237397*23739725630718911Syntrophobotulus glycolicus DSM 8271 chromosome, complete genome4e-20107BLASTN svgBLASTP svg
NC_014538:2158131*2158131218594827818Thermoanaerobacter sp. X513 chromosome, complete genome3e-18101BLASTN svgBLASTP svg
NC_015958:677500*67750069545217953Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_015555:21193521193523209920165Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete9e-0969.9BLASTN svgBLASTP svg
NC_014926:295988*29598832694930962Thermovibrio ammonificans HB-1 chromosome, complete genome5e-0763.9BLASTN svgBLASTP svg
NS_000191:782337*78233780392821592Uncultured Termite group 1 bacterium phylotype Rs-D17, complete6e-1073.8BLASTN svgBLASTP svg