Pre_GI: BLASTP Hits

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Query: NC_003366:981105:994044 Clostridium perfringens str. 13, complete genome

Start: 994044, End: 994988, Length: 945

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:904000:920802920802921746945Clostridium perfringens SM101, complete genomePeriplasmic binding protein family2e-179628
NC_017200:4240500:424055542405554241499945Bacillus thuringiensis serovar finitimus YBT-020 chromosome,iron compound ABC transporter substrate-binding protein9e-59227
NC_004193:375416:477647477647478612966Oceanobacillus iheyensis HTE831, complete genomeferrichrome ABC transporter ferrichrome-binding protein2e-22106
NC_010184:3213347:323090632309063231814909Bacillus weihenstephanensis KBAB4, complete genomeperiplasmic binding protein4e-1995.5
NC_006371:1973500:198304319830431983993951Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical protein5e-1995.5
NC_014622:3955851:3980635398063539816751041Paenibacillus polymyxa SC2 chromosome, complete genomeiron(III) dicitrate ABC transporter permease6e-1995.1
NC_017353:152151:174288174288175208921Staphylococcus lugdunensis N920143, complete genomehypothetical protein1e-1894
NC_019897:3669888:3669888366988836709221035Thermobacillus composti KWC4 chromosome, complete genomeFe3+-hydroxamate ABC transporter substrate-binding protein5e-1892
NC_020410:3755978:375597837559783756940963Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeABC transporter (ferrioxamine binding lipoprotein)2e-1789.7
NC_017277:15937:167401674017687948Synechocystis sp. PCC 6803, complete genomeiron(III) dicitrate transport system permeaseprotein1e-1480.9
NC_017052:15937:167401674017687948Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeiron(III) dicitrate transport system permeaseprotein1e-1480.9
NC_017039:15937:167401674017687948Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeiron(III) dicitrate transport system permeaseprotein1e-1480.9
NC_000911:15937:167401674017687948Synechocystis sp. PCC 6803, complete genomeiron(III) dicitrate transport system permease protein; FecB1e-1480.9
NC_003450:3266604:3284397328439732854251029Corynebacterium glutamicum ATCC 13032, complete genomeABC-type transport systems, periplasmic component1e-1480.5
NC_006958:3240019:3257704325770432587321029Corynebacterium glutamicum ATCC 13032, complete genomeABC-type cobalamin/Fe3+-siderophores transport system, secreted component1e-1480.5
NC_017316:2466244:248510924851092486062954Enterococcus faecalis OG1RF chromosome, complete genomeferric (Fe+3) ABC superfamily ATP binding cassette transporter, binding protein4e-1479.3
NC_016641:2618587:264155326415532642545993Paenibacillus terrae HPL-003 chromosome, complete genomesiderophore iron ABC transporter substrate-binding protein1e-1377
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome2e-1376.6
NC_004668:2938000:295748529574852958438954Enterococcus faecalis V583, complete genomeiron compound ABC transporter, substrate-binding protein3e-1376.3
NC_014622:3955851:3978024397802439797451722Paenibacillus polymyxa SC2 chromosome, complete genomeABC fe(3+) transporter permease4e-1375.9
NC_009921:3551036:357888235788823579868987Frankia sp. EAN1pec, complete genomeperiplasmic binding protein6e-1375.1
NC_010120:199942:221885221885222850966Neisseria meningitidis 053442, complete genomeiron(III) ABC transporter, periplasmic binding protein2e-1273.6
NC_014915:3039639:304614030461403047081942Geobacillus sp. Y412MC52 chromosome, complete genomeperiplasmic binding protein2e-1273.2
NC_013406:3672857:371093337109333711919987Paenibacillus sp. Y412MC10 chromosome, complete genomeperiplasmic-binding protein2e-1273.2
NC_006510:2910000:292648229264822927423942Geobacillus kaustophilus HTA426, complete genomeferrichrome ABC transporter (substrate-binding protein)2e-1273.2
NC_014622:724000:737822737822738733912Paenibacillus polymyxa SC2 chromosome, complete genomeABC transporter3e-1272.8
NC_007907:321537:3358173358173368271011Desulfitobacterium hafniense Y51, complete genomehypothetical protein4e-1272.4
NC_005957:4311679:432630743263074327281975Bacillus thuringiensis serovar konkukian str. 97-27, completeiron compound ABC transporter, iron compound-binding protein6e-1271.6
NC_016641:5671186:569648056964805697478999Paenibacillus terrae HPL-003 chromosome, complete genomeiron iii dicitrate transport protein2e-1170.5
NC_003272:2560329:2576629257662925777141086Nostoc sp. PCC 7120, complete genomeferrichrome binding protein of ABC transporter3e-1169.7
NC_004193:375416:5751775751775762051029Oceanobacillus iheyensis HTE831, complete genomeferrichrome ABC transporter binding protein1e-1067.4
NC_012846:1837924:185235218523521853302951Bartonella grahamii as4aup, complete genomeferric anguibactin-binding protein7e-1065.1
NC_014829:405104:4260594260594270601002Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeperiplasmic binding protein7e-1064.7
NC_017160:4508000:451075445107544511707954Yersinia pestis D182038 chromosome, complete genomeputative iron transport protein8e-1064.7
NC_010465:62348:795577955780510954Yersinia pseudotuberculosis YPIII, complete genomeperiplasmic binding protein8e-1064.7
NC_013406:3672857:3709192370919237107811590Paenibacillus sp. Y412MC10 chromosome, complete genomeAraC family transcriptional regulator1e-0963.9
NC_010161:1914000:192907519290751930025951Bartonella tribocorum CIP 105476, complete genomeferric anguibactin-binding protein2e-0963.2
NC_020418:1397112:142402214240221424978957Morganella morganii subsp. morganii KT, complete genomeFerric anguibactin-binding protein3e-0962.8
NC_014622:724000:7388937388937405601668Paenibacillus polymyxa SC2 chromosome, complete genomeiron-hydroxamate ABC transporter periplasmic protein1e-0860.8
NC_012032:398419:406685406685407641957Chloroflexus sp. Y-400-fl, complete genomeperiplasmic binding protein1e-0757.8
NC_010175:398453:406719406719407675957Chloroflexus aurantiacus J-10-fl, complete genomeperiplasmic binding protein1e-0757.8
NC_010465:733916:7604907604907615691080Yersinia pseudotuberculosis YPIII, complete genomeperiplasmic binding protein1e-0757.8
NC_008150:3430000:3430055343005534311341080Yersinia pestis Antiqua, complete genomeperiplasmic binding protein1e-0757.4
NC_005810:3333000:3354219335421933552981080Yersinia pestis biovar Microtus str. 91001, complete genomeiron-enterobactin transporter periplasmic binding protein1e-0757.4
NC_004088:3859173:3859173385917338602521080Yersinia pestis KIM, complete genomeferric enterobactin (enterochelin) binding protein1e-0757.4
NC_010159:259695:2596952596952607741080Yersinia pestis Angola, complete genomeferrienterobactin-binding periplasmic protein1e-0757.4
NC_008149:650706:6718176718176728961080Yersinia pestis Nepal516, complete genomeperiplasmic binding protein1e-0757.4
NC_009381:522731:5438405438405449191080Yersinia pestis Pestoides F chromosome, complete genomeiron-enterobactin transporter periplasmic binding protein1e-0757.4
NC_014029:792719:8145358145358156141080Yersinia pestis Z176003 chromosome, complete genomeferric enterobactin (enterochelin) binding protein1e-0757.4
NC_017160:737000:7588767588767599551080Yersinia pestis D182038 chromosome, complete genomeferric enterobactin (enterochelin) binding protein1e-0757.4
NC_017168:341233:3412333412333423121080Yersinia pestis A1122 chromosome, complete genomeiron-enterobactin transporter periplasmic binding protein1e-0757.4
NC_017265:3724500:3724533372453337256121080Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,periplasmic binding protein1e-0757.4
NC_003143:741169:7629907629907640031014Yersinia pestis CO92, complete genomeperiplasmic binding protein2e-0756.6
NC_000911:15937:2410124101251441044Synechocystis sp. PCC 6803, complete genomehypothetical protein5e-0755.5
NC_017039:15937:2410124101251441044Synechocystis sp. PCC 6803 substr. PCC-P, complete genomehypothetical protein5e-0755.5
NC_017052:15937:2410124101251441044Synechocystis sp. PCC 6803 substr. PCC-N, complete genomehypothetical protein5e-0755.5
NC_017277:15937:2410124101251441044Synechocystis sp. PCC 6803, complete genomehypothetical protein5e-0755.5
NC_012880:1765920:1779147177914717802021056Dickeya dadantii Ech703, complete genomeperiplasmic binding protein1e-0654.3
NC_015673:525638:5467105467105479061197Corynebacterium resistens DSM 45100 chromosome, complete genomeiron complex-binding protein1e-0653.9
NC_010184:4879552:4880588488058848816011014Bacillus weihenstephanensis KBAB4, complete genomeperiplasmic binding protein3e-0652.8
NC_014329:1041556:106299110629911063896906Corynebacterium pseudotuberculosis FRC41 chromosome, completeiron ABC transporter substrate-binding protein4e-0652.4
NC_017300:1045555:106046410604641061369906Corynebacterium pseudotuberculosis 1002 chromosome, completeIron ABC transporter substrate-binding protein4e-0652.4
NC_016932:1041306:105460710546071055512906Corynebacterium pseudotuberculosis 316 chromosome, complete genomeIron ABC transporter substrate-binding protein4e-0652.4
NC_017305:1037133:106039910603991061304906Corynebacterium pseudotuberculosis PAT10 chromosome, completeIron ABC transporter substrate-binding protein5e-0652
NC_017303:1039562:106282810628281063733906Corynebacterium pseudotuberculosis I19 chromosome, complete genomeIron ABC transporter substrate-binding protein5e-0652
NC_017301:1037519:106262710626271063532906Corynebacterium pseudotuberculosis C231 chromosome, completeIron ABC transporter substrate-binding protein5e-0652
NC_017031:1039548:106281410628141063719906Corynebacterium pseudotuberculosis P54B96 chromosome, completeIron ABC transporter substrate-binding protein5e-0652
NC_016612:3843358:386816338681633869065903Klebsiella oxytoca KCTC 1686 chromosome, complete genomeiron-dicitrate transporter substrate-binding subunit5e-0652
NC_005955:1205836:122006012200601220959900Bartonella quintana str. Toulouse, complete genomeFerric anguibactin-binding protein7e-0651.6
NC_009342:464210:500065500065500946882Corynebacterium glutamicum R chromosome, complete genomehypothetical protein8e-0651.6