Pre_GI: BLASTP Hits

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Query: NC_003366:863437:872824 Clostridium perfringens str. 13, complete genome

Start: 872824, End: 873789, Length: 966

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:784878:8117238117238127961074Clostridium perfringens SM101, complete genomechorismate synthase2e-146518
NC_008261:817295:8265448265448276171074Clostridium perfringens ATCC 13124, complete genomechorismate synthase4e-146517
NC_008593:2281896:2303545230354523046151071Clostridium novyi NT, complete genomechorismate synthase2e-91336
NC_015425:2528549:2553714255371425547811068Clostridium botulinum BKT015925 chromosome, complete genomeChorismate synthase1e-90333
NC_014614:2500301:2504431250443125055431113Clostridium sticklandii, complete genomechorismate synthase2e-81303
NC_016077:8545:3056530565316381074Acidaminococcus intestini RyC-MR95 chromosome, complete genomechorismate synthase4e-79295
NC_014833:406889:4148534148534159441092Ruminococcus albus 7 chromosome, complete genomechorismate synthase1e-76286
NC_014804:341663:3539133539133549951083Thermococcus barophilus MP chromosome, complete genomechorismate synthase8e-62237
NC_009515:1481051:1499415149941515005091095Methanobrevibacter smithii ATCC 35061, complete genomechorismate synthase6e-61234
NC_015474:252390:2675022675022685931092Pyrococcus sp. NA2 chromosome, complete genomechorismate synthase2e-60233
NC_002578:877609:8819438819438830251083Thermoplasma acidophilum DSM 1728, complete genomechorismate synthase2e-59229
NC_020389:1777409:1779450177945017805471098Methanosarcina mazei Tuc01, complete genomeChorismate synthase9e-59227
NC_014222:1045281:1062092106209210632581167Methanococcus voltae A3 chromosome, complete genomechorismate synthase5e-54211
NC_015672:2102580:2113991211399121150581068Flexistipes sinusarabici DSM 4947 chromosome, complete genomechorismate synthase4e-53208
NC_012778:748143:7679347679347690341101Eubacterium eligens ATCC 27750, complete genomechorismate synthase7e-52204
NC_014033:619469:6461566461566472411086Prevotella ruminicola 23 chromosome, complete genomechorismate synthase3e-51202
NC_014758:1387470:1403495140349514045501056Calditerrivibrio nitroreducens DSM 19672 chromosome, completechorismate synthase4e-50198
NC_014933:3942156:3965550396555039666261077Bacteroides helcogenes P 36-108 chromosome, complete genomechorismate synthase9e-49194
NC_011147:529458:5523215523215534061086Salmonella enterica subsp. enterica serovar Paratyphi A strchorismate synthase1e-48194
NC_016832:531208:5540205540205551051086Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Chorismate synthase1e-48193
NC_004631:531254:5540665540665551511086Salmonella enterica subsp. enterica serovar Typhi Ty2, completechorismate synthase1e-48193
NC_012125:1360593:1384585138458513856731089Salmonella enterica subsp. enterica serovar Paratyphi C strainchorismate synthase5e-48191
NC_013851:2441407:2442631244263124437401110Allochromatium vinosum DSM 180 chromosome, complete genomechorismate synthase9e-48190
NC_007681:657351:6707406707406718371098Methanosphaera stadtmanae DSM 3091, complete genomeAroC1e-47190
NC_016830:4999946:5001126500112650022171092Pseudomonas fluorescens F113 chromosome, complete genomeChorismate synthase2e-47189
NC_015518:1095879:1103076110307611042481173Acidianus hospitalis W1 chromosome, complete genomeChorismate synthase5e-47188
NC_012588:1655615:1664439166443916656141176Sulfolobus islandicus M.14.25 chromosome, complete genomechorismate synthase8e-47187
NC_012726:1685442:1690569169056916917441176Sulfolobus islandicus M.16.4 chromosome, complete genomechorismate synthase8e-47187
NC_017275:1705827:1714651171465117158261176Sulfolobus islandicus HVE10/4 chromosome, complete genomeChorismate synthase8e-47187
NC_012632:1785210:1790337179033717915121176Sulfolobus islandicus M.16.27 chromosome, complete genomechorismate synthase7e-47187
NC_019791:99793:1054721054721066021131Caldisphaera lagunensis DSM 15908 chromosome, complete genomechorismate synthase2e-46186
NC_007181:141299:1505371505371517121176Sulfolobus acidocaldarius DSM 639, complete genomechorismate synthase2e-46186
NC_008345:3199965:3202641320264132037351095Shewanella frigidimarina NCIMB 400, complete genomeChorismate synthase2e-46186
NC_008817:228029:2373122373122384061095Prochlorococcus marinus str. MIT 9515, complete genomeChorismate synthase2e-46186
NC_009901:3148901:3151216315121631523101095Shewanella pealeana ATCC 700345, complete genomeChorismate synthase3e-46186
NC_010334:3224009:3225163322516332262571095Shewanella halifaxensis HAW-EB4, complete genomeChorismate synthase4e-46185
NC_013416:1526920:1541218154121815422911074Aggregatibacter actinomycetemcomitans D11S-1, complete genomechorismate synthase4e-46185
NC_009348:2034500:2050823205082320519111089Aeromonas salmonicida subsp. salmonicida A449, complete genomechorismate synthase5e-46184
NC_016513:1859767:1876368187636818774411074Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completechorismate synthase8e-46184
NC_008577:1690946:1707823170782317089171095Shewanella sp. ANA-3 chromosome 1, complete sequencechorismate synthase8e-46184
NC_015435:354837:3678903678903690591170Metallosphaera cuprina Ar-4 chromosome, complete genomechorismate synthase2e-45183
NC_014618:1452927:1472612147261214736971086Enterobacter cloacae SCF1 chromosome, complete genomechorismate synthase1e-45183
NC_008321:1636148:1653138165313816542321095Shewanella sp. MR-4, complete genomechorismate synthase1e-45183
NC_008322:1708631:1724501172450117255951095Shewanella sp. MR-7, complete genomechorismate synthase1e-45183
NC_003106:2272313:2282713228271322838851173Sulfolobus tokodaii str. 7, complete genomechorismate synthase3e-45182
NC_009092:2833865:2836447283644728375411095Shewanella loihica PV-4, complete genomeChorismate synthase7e-45181
NC_011663:1867000:1881915188191518830091095Shewanella baltica OS223 chromosome, complete genomechorismate synthase1e-44180
NC_009052:3229775:3231042323104232321361095Shewanella baltica OS155, complete genomeChorismate synthase1e-44180
NC_009925:1109770:1109770110977011108641095Acaryochloris marina MBIC11017, complete genomechorismate synthase1e-44180
NC_008700:2607526:2608704260870426098011098Shewanella amazonensis SB2B, complete genomeChorismate synthase2e-44179
NC_009663:2363841:2363841236384123649141074Sulfurovum sp. NBC37-1, complete genomechorismate synthase8e-44177
NC_009440:1810301:1816146181614618173181173Metallosphaera sedula DSM 5348 chromosome, complete genomechorismate synthase1e-43177
NC_004545:96422:1015261015261025931068Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomechorismate synthase2e-43176
NC_016002:1048420:1050359105035910514591101Pseudogulbenkiania sp. NH8B, complete genomechorismate synthase2e-43176
NC_015681:102000:1147851147851158761092Thermodesulfatator indicus DSM 15286 chromosome, complete genomechorismate synthase2e-42172
NC_016146:423190:4221054221054231931089Blattabacterium sp. (Mastotermes darwiniensis) str. MADARchorismate synthase2e-42172
NC_008781:2883968:2889188288918828902851098Polaromonas naphthalenivorans CJ2, complete genomeChorismate synthase7e-42171
NC_015856:3436951:3436951343695134380391089Collimonas fungivorans Ter331 chromosome, complete genomechorismate synthase3e-41169
NC_015151:1403500:1412617141261714137171101Vulcanisaeta moutnovskia 768-28 chromosome, complete genomechorismate synthase7e-41167
NC_008702:1094663:1113825111382511149611137Azoarcus sp. BH72, complete genomeAroC protein2e-40166
NC_013418:459650:4612894612894623681080Blattabacterium sp. (Periplaneta americana) str. BPLAN, completechorismate synthase2e-40166
NC_012108:2542328:2547596254759625487141119Desulfobacterium autotrophicum HRM2, complete genomeAroC24e-40165
NC_004347:3197219:319877431987743199559786Shewanella oneidensis MR-1, complete genomechorismate synthase7e-37154
NC_005955:427142:4329674329674340671101Bartonella quintana str. Toulouse, complete genomechorismate synthase3e-34145
NC_011772:2860000:2871232287123228724041173Bacillus cereus G9842, complete genomechorismate synthase3e-28125
NC_003909:2798622:2807588280758828087601173Bacillus cereus ATCC 10987, complete genomechorismate synthase5e-28125
NC_005957:2756000:2765326276532627664981173Bacillus thuringiensis serovar konkukian str. 97-27, completechorismate synthase2e-27123
NC_014335:2718000:2728547272854727297191173Bacillus cereus biovar anthracis str. CI chromosome, completechorismate synthase2e-27123
NC_011969:2706000:2716315271631527174871173Bacillus cereus Q1 chromosome, complete genomechorismate synthase2e-27123
NC_017208:2942554:2953494295349429546661173Bacillus thuringiensis serovar chinensis CT-43 chromosome, completechorismate synthase1e-27123
NC_006274:2779380:2789872278987227910441173Bacillus cereus E33L, complete genomechorismate synthase5e-27122
NC_008600:2792584:2801637280163728028091173Bacillus thuringiensis str. Al Hakam, complete genomechorismate synthase3e-27122
NC_005945:2716000:2726286272628627274581173Bacillus anthracis str. Sterne, complete genomechorismate synthase3e-27122
NC_003997:2715623:2725823272582327269951173Bacillus anthracis str. Ames, complete genomechorismate synthase3e-27122
NC_007530:2716885:2725951272595127271231173Bacillus anthracis str. 'Ames Ancestor', complete genomechorismate synthase3e-27122
NC_012581:1505276:1511567151156715127391173Bacillus anthracis str. CDC 684 chromosome, complete genomechorismate synthase3e-27122
NC_012659:2715651:2725851272585127270231173Bacillus anthracis str. A0248, complete genomechorismate synthase3e-27122
NC_011773:2782465:2791635279163527928071173Bacillus cereus AH820 chromosome, complete genomechorismate synthase3e-27122
NC_016779:2693790:2702997270299727041691173Bacillus cereus F837/76 chromosome, complete genomeChorismate synthase2e-27122
NC_003869:1643682:1661646166164616626981053Thermoanaerobacter tengcongensis MB4, complete genomechorismate synthase2e-26119
NC_014654:422013:4330784330784342771200Halanaerobium sp. 'sapolanicus' chromosome, complete genomechorismate synthase7e-26118
NC_011725:1486635:1500496150049615016681173Bacillus cereus B4264 chromosome, complete genomechorismate synthase8e-26117
NC_015185:1296917:1297236129723612984021167Desulfurobacterium thermolithotrophum DSM 11699 chromosome,chorismate synthase2e-25116
NC_014960:216965:2242362242362254291194Anaerolinea thermophila UNI-1, complete genomechorismate synthase3e-25115
NC_014926:1483974:1503280150328015044281149Thermovibrio ammonificans HB-1 chromosome, complete genomechorismate synthase4e-25115
NC_000918:35564:5060550605518011197Aquifex aeolicus VF5, complete genomechorismate synthase3e-2099.4
NC_007498:2475781:2483954248395424851171164Pelobacter carbinolicus DSM 2380, complete genomechorismate synthase4e-2099
NC_009785:1414892:1414892141489214160581167Streptococcus gordonii str. Challis substr. CH1, complete genomechorismate synthase2e-1996.7
NC_011979:3341099:3345612334561233467931182Geobacter sp. FRC-32, complete genomeChorismate synthase6e-1995.1
NC_014761:1405408:1424961142496114261181158Oceanithermus profundus DSM 14977 chromosome, complete genomechorismate synthase4e-1892.4
NC_009483:2086021:2109543210954321107241182Geobacter uraniireducens Rf4 chromosome, complete genomechorismate synthase5e-1789
NC_009953:2106572:2123127212312721243351209Salinispora arenicola CNS-205 chromosome, complete genomechorismate synthase8e-1684.7
NC_013521:1976331:1991349199134919925361188Sanguibacter keddieii DSM 10542, complete genomechorismate synthase9e-1581.3
NC_013169:1290000:1292117129211712933551239Kytococcus sedentarius DSM 20547, complete genomechorismate synthase1e-1377.4
NC_016799:1343020:1386538138653813877491212Corynebacterium diphtheriae 31A chromosome, complete genomechorismate synthase2e-1376.6
NC_016800:1344189:1359650135965013608611212Corynebacterium diphtheriae BH8 chromosome, complete genomechorismate synthase3e-1376.3
NC_016788:1315877:1330497133049713317081212Corynebacterium diphtheriae HC04 chromosome, complete genomechorismate synthase9e-1374.7
NC_016789:1334514:1376894137689413781051212Corynebacterium diphtheriae PW8 chromosome, complete genomechorismate synthase1e-1274.3
NC_016790:1259356:1297886129788612990971212Corynebacterium diphtheriae VA01 chromosome, complete genomechorismate synthase1e-1274.3
NC_016787:1276983:1320504132050413217151212Corynebacterium diphtheriae HC03 chromosome, complete genomechorismate synthase1e-1274.3
NC_016801:1361597:1376214137621413774251212Corynebacterium diphtheriae C7 (beta) chromosome, complete genomechorismate synthase1e-1274.3
NC_016783:1313008:1355386135538613565971212Corynebacterium diphtheriae INCA 402 chromosome, complete genomechorismate synthase1e-1274.3
NC_002935:1315019:1357394135739413586051212Corynebacterium diphtheriae NCTC 13129, complete genomechorismate synthase1e-1274.3
NC_016782:1316467:1331086133108613322971212Corynebacterium diphtheriae 241 chromosome, complete genomechorismate synthase1e-1274.3
NC_016786:1316436:1331056133105613322671212Corynebacterium diphtheriae HC01 chromosome, complete genomechorismate synthase1e-1274.3
NC_016802:1317365:1331985133198513331961212Corynebacterium diphtheriae HC02 chromosome, complete genomechorismate synthase1e-1274.3
NC_016785:1297208:1312669131266913138801212Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomechorismate synthase1e-1274.3
NC_013124:1784117:1803183180318318043611179Acidimicrobium ferrooxidans DSM 10331, complete genomechorismate synthase7e-1168.6
NC_015573:1979202:1979202197920219804761275Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomechorismate synthase4e-0962.4