Pre_GI: BLASTP Hits

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Query: NC_003366:863437:871378 Clostridium perfringens str. 13, complete genome

Start: 871378, End: 872652, Length: 1275

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:784878:8103858103858116591275Clostridium perfringens SM101, complete genome3-phosphoshikimate 1-carboxyvinyltransferase0802
NC_008261:817295:8252068252068264801275Clostridium perfringens ATCC 13124, complete genome3-phosphoshikimate 1-carboxyvinyltransferase0801
NC_015425:2528549:2554759255475925560661308Clostridium botulinum BKT015925 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase7e-127454
NC_014614:2500301:2505521250552125069271407Clostridium sticklandii, complete genome3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS)1e-125449
NC_008593:2281896:2304593230459323059001308Clostridium novyi NT, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-125449
NC_014614:757381:7719907719907732761287Clostridium sticklandii, complete genome3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS)3e-121435
NC_016077:8545:2927329273305501278Acidaminococcus intestini RyC-MR95 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-107390
NC_014833:406889:4113464113464125751230Ruminococcus albus 7 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-89329
NC_015847:1261276:1278654127865412799431290Methanococcus maripaludis XI chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase8e-74278
NC_005791:1173000:1191279119127911925681290Methanococcus maripaludis S2, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-72273
NC_009135:330628:3463373463373476261290Methanococcus maripaludis C5, complete genome3-phosphoshikimate 1-carboxyvinyltransferase4e-72272
NC_009637:438037:4605244605244618131290Methanococcus maripaludis C7 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase4e-72272
NC_012108:2542328:2545769254576925470881320Desulfobacterium autotrophicum HRM2, complete genomeAroA2e-57223
NC_003888:7561923:7580932758093275822541323Streptomyces coelicolor A3(2), complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-56220
NC_019977:1649546:1663765166376516650481284Methanomethylovorans hollandica DSM 15978, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-53209
NC_011094:1050700:1071140107114010724231284Salmonella enterica subsp. enterica serovar Schwarzengrund str3-phosphoshikimate 1-carboxyvinyltransferase6e-53208
NC_013790:2030960:2053299205329920546661368Methanobrevibacter ruminantium M1 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase AroA2e-52207
NC_015474:252390:2685752685752697801206Pyrococcus sp. NA2 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase6e-51202
NC_007712:1601499:1631619163161916329261308Sodalis glossinidius str. 'morsitans', complete genome3-phosphoshikimate 1-carboxyvinyltransferase7e-48191
NC_016632:1138000:1154450115445011557331284Serratia symbiotica str. 'Cinara cedri' chromosome, complete3-phosphoshikimate 1-carboxyvinyltransferase2e-47190
NC_014804:341663:3527053527053539161212Thermococcus barophilus MP chromosome, complete genome5-enolpyruvylshikimate-3-phosphate synthase6e-47188
NC_007404:974461:1016479101647910177651287Thiobacillus denitrificans ATCC 25259, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-43177
NC_008702:1153344:1153344115334411553051962Azoarcus sp. BH72, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-43176
NC_007296:1073784:1095685109568510969681284Streptococcus pyogenes MGAS6180, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-43176
NC_009440:1810301:1814238181423818154131176Metallosphaera sedula DSM 5348 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-42173
NC_006347:854301:8718058718058730371233Bacteroides fragilis YCH46, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-41170
NC_014228:3442159:3459783345978334611321350Xenorhabdus nematophila ATCC 19061, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-41170
NC_012891:1277966:1303263130326313045551293Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1,3-phosphoshikimate 1-carboxyvinyltransferase8e-41168
NC_015151:1403500:1403594140359414048951302Vulcanisaeta moutnovskia 768-28 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase7e-41168
NC_015589:2999735:3017982301798230192711290Desulfotomaculum ruminis DSM 2154 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-40167
NC_003228:793846:8084488084488096801233Bacteroides fragilis NCTC 9343, complete genomeputative 3-phosphoshikimate 1-carboxyvinyltransferase1e-40167
NC_008601:1151653:1152246115224611535231278Francisella tularensis subsp. novicida U112, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-40166
NC_016776:844641:8592438592438604751233Bacteroides fragilis 638R, complete genomeputative 3-phosphoshikimate 1-carboxyvinyltransferase4e-40166
NC_008781:2925818:2939676293967629416792004Polaromonas naphthalenivorans CJ2, complete genome3-phosphoshikimate 1-carboxyvinyltransferase9e-40164
NC_010677:707881:7284647284647297411278Francisella tularensis subsp. mediasiatica FSC147, complete genome3-phosphoshikimate 1-carboxyvinyltransferase9e-40164
NC_015966:2875140:2875140287514028764351296Rhodothermus marinus SG0.5JP17-172 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-39163
NC_014654:422013:4294594294594307451287Halanaerobium sp. 'sapolanicus' chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-39162
NC_010814:2275199:2294354229435422956581305Geobacter lovleyi SZ, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-38160
NC_009342:951761:9614389614389627301293Corynebacterium glutamicum R chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase6e-38158
NC_003450:788000:8011878011878024791293Corynebacterium glutamicum ATCC 13032, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-37157
NC_020419:977778:9834839834839847751293Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, complete3-phosphoshikimate 1-carboxyvinyltransferase6e-37155
NS_000191:977778:9834839834839847751293Uncultured Termite group 1 bacterium phylotype Rs-D17, complete3-phosphoshikimate 1-carboxyvinyltransferase6e-37155
NC_003106:2272313:2284624228462422858501227Sulfolobus tokodaii str. 7, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-36154
NC_012588:1655615:1662450166245016636941245Sulfolobus islandicus M.14.25 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-36154
NC_012726:1685442:1688580168858016898241245Sulfolobus islandicus M.16.4 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-36154
NC_017275:1705827:1712662171266217139061245Sulfolobus islandicus HVE10/4 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-36154
NC_011729:4591500:4591542459154245928881347Cyanothece sp. PCC 7424 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-36154
NC_012632:1785210:1788348178834817895921245Sulfolobus islandicus M.16.27 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-36154
NC_012778:364728:3844873844873857821296Eubacterium eligens ATCC 27750, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-36152
NC_008600:2792584:2798119279811927994081290Bacillus thuringiensis str. Al Hakam, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-35150
NC_016779:2693790:2699479269947927007681290Bacillus cereus F837/76 chromosome, complete genome5-Enolpyruvylshikimate-3-phosphate synthase3e-35149
NC_011772:2860000:2867713286771328690021290Bacillus cereus G9842, complete genome3-phosphoshikimate 1-carboxyvinyltransferase8e-35148
NC_017208:2942554:2949975294997529512641290Bacillus thuringiensis serovar chinensis CT-43 chromosome, complete3-phosphoshikimate 1-carboxyvinyltransferase1e-34147
NC_013522:1683326:1706056170605617073661311Thermanaerovibrio acidaminovorans DSM 6589, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-34147
NC_003909:2798622:2804070280407028053591290Bacillus cereus ATCC 10987, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-34147
NC_005957:2756000:2761809276180927630981290Bacillus thuringiensis serovar konkukian str. 97-27, complete3-phosphoshikimate 1-carboxyvinyltransferase2e-34147
NC_009511:2726296:2728912272891227303511440Sphingomonas wittichii RW1 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-34146
NC_014335:2718000:2725029272502927263181290Bacillus cereus biovar anthracis str. CI chromosome, complete3-phosphoshikimate 1-carboxyvinyltransferase3e-34146
NC_011773:2782465:2788117278811727894061290Bacillus cereus AH820 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-34146
NC_006274:2779380:2786354278635427876431290Bacillus cereus E33L, complete genome3-phosphoshikimate 1-carboxyvinyltransferase9e-34144
NC_015518:1095879:1101153110115311023401188Acidianus hospitalis W1 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-33143
NC_007530:2716885:2722433272243327237221290Bacillus anthracis str. 'Ames Ancestor', complete genome3-phosphoshikimate 1-carboxyvinyltransferase7e-33142
NC_003997:2715623:2722305272230527235941290Bacillus anthracis str. Ames, complete genome3-phosphoshikimate 1-carboxyvinyltransferase7e-33142
NC_005945:2716000:2722768272276827240571290Bacillus anthracis str. Sterne, complete genome3-phosphoshikimate 1-carboxyvinyltransferase7e-33142
NC_012581:1505276:1514968151496815162571290Bacillus anthracis str. CDC 684 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase7e-33142
NC_012659:2715651:2722333272233327236221290Bacillus anthracis str. A0248, complete genome3-phosphoshikimate 1-carboxyvinyltransferase7e-33142
NC_015435:354837:3697953697953709941200Metallosphaera cuprina Ar-4 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase4e-33142
NC_014537:222114:2221142221142234031290Vulcanisaeta distributa DSM 14429 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase4e-33142
NC_007181:141299:1526081526081536841077Sulfolobus acidocaldarius DSM 639, complete genome3-phosphoshikimate 1-carboxyvinyltransferase8e-33141
NC_011146:3720658:3749412374941237507011290Geobacter bemidjiensis Bem, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-32140
NC_015275:654959:6663226663226676351314Clostridium lentocellum DSM 5427 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase5e-32139
NC_013939:2117663:2134079213407921353531275Deferribacter desulfuricans SSM1, complete genome3-phosphoshikimate 1-carboxyvinyltransferase5e-32139
NC_010524:1005355:1028428102842810305272100Leptothrix cholodnii SP-6, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-31138
NC_003902:1858349:1859685185968518610011317Xanthomonas campestris pv. campestris str. ATCC 33913, complete3-phosphoshikimate 1-carboxyvinyltransferase1e-30134
NC_009012:2100000:2122003212200321232741272Clostridium thermocellum ATCC 27405, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-30133
NC_015953:4908069:4913035491303549144141380Streptomyces sp. SirexAA-E chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-30132
NC_010322:1520973:1520973152097315232132241Pseudomonas putida GB-1 chromosome, complete genomebifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase8e-30131
NC_012704:1747539:1769349176934917708421494Corynebacterium kroppenstedtii DSM 44385, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-29129
NC_015733:1555476:1555476155547615577162241Pseudomonas putida S16 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase7e-29128
NC_002932:1798869:1813535181353518148391305Chlorobium tepidum TLS, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-28127
NC_012660:1804610:1807904180790418101502247Pseudomonas fluorescens SBW25 chromosome, complete genomebifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase8e-28125
NC_020209:997385:99963099963010018402211Pseudomonas poae RE*1-1-14, complete genomebifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase5e-28125
NC_018080:1834754:1838107183810718403472241Pseudomonas aeruginosa DK2 chromosome, complete genomebifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase3e-27122
NC_011770:2046490:2049843204984320520832241Pseudomonas aeruginosa LESB58, complete genomestill frameshift 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE prephenate dehydrogenase4e-27122
NC_015410:2144387:2146686214668621489262241Pseudomonas mendocina NK-01 chromosome, complete genomebifunctional cyclohexadienyl dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase6e-27122
NC_011969:2706000:2712797271279727139961200Bacillus cereus Q1 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase7e-27122
NC_002939:2844240:2873688287368828749771290Geobacter sulfurreducens PCA, complete genome3-phosphoshikimate 1-carboxyvinyltransferase9e-27121
NC_015672:1921023:1963445196344519647341290Flexistipes sinusarabici DSM 4947 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase9e-27121
NC_008463:2017607:2020960202096020232002241Pseudomonas aeruginosa UCBPP-PA14, complete genomeEPSP synthase/prephenate dehydrogenase1e-26120
NC_020411:905335:9053359053359066181284Hydrogenobaculum sp. HO, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-26120
NC_015557:905145:9051459051459064281284Hydrogenobaculum sp. 3684 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-26120
NC_015587:905255:9052559052559065381284Hydrogenobaculum sp. SHO chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase3e-26120
NC_014934:2482934:2504420250442025056491230Cellulophaga algicola DSM 14237 chromosome, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-24114
NC_011027:303000:3087973087973101011305Chlorobaculum parvum NCIB 8327, complete genome3-phosphoshikimate 1-carboxyvinyltransferase1e-24114
NC_013169:1941410:1959023195902319600691047Kytococcus sedentarius DSM 20547, complete genome5-enolpyruvylshikimate-3-phosphate synthase2e-24113
NC_017187:1923733:1934210193421019354871278Arcobacter butzleri ED-1, complete genome3-phosphoshikimate 1-carboxyvinyltransferase5e-23109
NC_008701:1607419:1610539161053916117381200Pyrobaculum islandicum DSM 4184, complete genome3-phosphoshikimate 1-carboxyvinyltransferase5e-23108
NC_008027:1559083:1564335156433515665752241Pseudomonas entomophila L48, complete genomeprephenate dehydrogenase, putative/3-phosphoshikimate 1-carboxyvinyltransferase AroA7e-23108
NC_004129:4993974:5009579500957950118042226Pseudomonas fluorescens Pf-5, complete genomeprephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase1e-22108
NC_015379:1887275:1889524188952418917312208Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,3-phosphoshikimate 1-carboxyvinyltransferase (bifunctional protein prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase)2e-22107
NC_016830:1901488:1903737190373719059442208Pseudomonas fluorescens F113 chromosome, complete genomeCyclohexadienyl dehydrogenase / 5-Enolpyruvylshikimate-3-phosphate synthase2e-22107
NC_009656:1994392:1997742199774219999822241Pseudomonas aeruginosa PA7 chromosome, complete genomebifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase1e-21104
NC_009662:645871:6654646654646667651302Nitratiruptor sp. SB155-2, complete genome3-phosphoshikimate 1-carboxyvinyltransferase7e-21102
NC_009439:2038303:2040591204059120428312241Pseudomonas mendocina ymp, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-20100
NC_017216:1092751:1112610111261011139981389Bifidobacterium animalis subsp. lactis BLC1, complete genome3-phosphoshikimate 1-carboxyvinyltransferase2e-20100
NC_017215:1091941:1112388111238811137761389Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,3-phosphoshikimate 1-carboxyvinyltransferase2e-20100
NC_017214:1727676:1747506174750617488941389Bifidobacterium animalis subsp. lactis BB-12 chromosome, complete3-phosphoshikimate 1-carboxyvinyltransferase2e-20100
NC_011835:1819707:1839565183956518409531389Bifidobacterium animalis subsp. lactis AD011 chromosome, complete3-phosphoshikimate 1-carboxyvinyltransferase2e-20100
NC_012814:1092860:1112719111271911140651347Bifidobacterium animalis subsp. lactis Bl-04, complete genome3-phosphoshikimate 1-carboxyvinyltransferase6e-2099
NC_012815:1092795:1112654111265411140001347Bifidobacterium animalis subsp. lactis DSM 10140, complete genome3-phosphoshikimate 1-carboxyvinyltransferase6e-2099
NC_017217:1092916:1112775111277511141211347Bifidobacterium animalis subsp. lactis V9 chromosome, complete3-phosphoshikimate 1-carboxyvinyltransferase6e-2099
NC_014960:216965:2220322220322233571326Anaerolinea thermophila UNI-1, complete genome3-phosphoshikimate 1-carboxyvinyltransferase5e-1995.9
NC_019791:99793:1073481073481085711224Caldisphaera lagunensis DSM 15908 chromosome, complete genome5-enolpyruvylshikimate-3-phosphate synthase2e-1584.3
NC_015673:106038:1194881194881207441257Corynebacterium resistens DSM 45100 chromosome, complete genomeUDP-N-acetylglucosamine 1-carboxyvinyltransferase4e-0963.2
NC_011653:1616423:1632334163233416335811248Thermosipho africanus TCF52B, complete genomeUDP-N-acetylglucosamine 1-carboxyvinyltransferase4e-0756.2
NC_009654:3215205:3232920323292032351662247Marinomonas sp. MWYL1, complete genomeprephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase6e-0652.4