Pre_GI: BLASTP Hits

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Query: NC_003366:863437:870079 Clostridium perfringens str. 13, complete genome

Start: 870079, End: 871131, Length: 1053

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:817295:8239618239618250131053Clostridium perfringens ATCC 13124, complete genome3-dehydroquinate synthase5e-178623
NC_008262:784878:8093108093108103621053Clostridium perfringens SM101, complete genome3-dehydroquinate synthase8e-177619
NC_015425:2528549:2556081255608125571421062Clostridium botulinum BKT015925 chromosome, complete genome3-dehydroquinate synthase2e-89328
NC_014614:2500301:2506954250695425080121059Clostridium sticklandii, complete genome3-dehydroquinate synthase2e-75283
NC_016077:8545:2820628206292761071Acidaminococcus intestini RyC-MR95 chromosome, complete genome3-dehydroquinate synthase7e-74277
NC_009785:1414892:1416147141614714172141068Streptococcus gordonii str. Challis substr. CH1, complete genome3-dehydroquinate synthase2e-64246
NC_010475:1161000:1179740117974011808371098Synechococcus sp. PCC 7002, complete genome3-dehydroquinate synthase1e-63243
NC_007498:2475781:2482758248275824838461089Pelobacter carbinolicus DSM 2380, complete genome3-dehydroquinate synthase1e-56220
NC_009483:2086021:2111237211123721123191083Geobacter uraniireducens Rf4 chromosome, complete genome3-dehydroquinate synthase6e-56218
NC_017052:1610500:1642698164269816437831086Synechocystis sp. PCC 6803 substr. PCC-N, complete genome3-dehydroquinate synthase1e-54213
NC_017039:1610602:1642710164271016437951086Synechocystis sp. PCC 6803 substr. PCC-P, complete genome3-dehydroquinate synthase1e-54213
NC_000911:1611500:1643682164368216447671086Synechocystis sp. PCC 6803, complete genome3-dehydroquinate synthase1e-54213
NC_008312:7635217:7651699765169976527901092Trichodesmium erythraeum IMS101, complete genome3-dehydroquinate synthase4e-54212
NC_007335:117572:1205331205331216391107Prochlorococcus marinus str. NATL2A, complete genome3-dehydroquinate synthase2e-53209
NC_008783:29972:4277142771439041134Bartonella bacilliformis KC583, complete genome3-dehydroquinate synthase3e-52206
NC_008319:1306482:1306482130648213076151134Synechococcus sp. CC9311, complete genome3-dehydroquinate synthase3e-52206
NC_007513:987969:1014682101468210158151134Synechococcus sp. CC9902, complete genome3-dehydroquinate synthase5e-52205
NC_008819:679320:6832706832706843761107Prochlorococcus marinus str. NATL1A, complete genome3-dehydroquinate synthase6e-52204
NC_014960:216965:2254262254262269911566Anaerolinea thermophila UNI-1, complete genomeshikimate kinase/3-dehydroquinate synthase3e-51202
NC_007298:219783:2323542323542334481095Dechloromonas aromatica RCB, complete genome3-dehydroquinate synthase1e-50200
NC_016616:1091606:1133903113390311349971095Dechlorosoma suillum PS chromosome, complete genome3-dehydroquinate synthase5e-50198
NC_011992:717107:7329357329357340381104Acidovorax ebreus TPSY, complete genome3-dehydroquinate synthase6e-50198
NC_012846:2299282:2302913230291323040461134Bartonella grahamii as4aup, complete genome3-dehydroquinate synthase9e-50197
NC_014935:1287494:1289204128920412902561053Nitratifractor saLSUginis DSM 16511 chromosome, complete genome3-dehydroquinate synthase9e-50197
NC_008782:752686:7742757742757753781104Acidovorax sp. JS42, complete genome3-dehydroquinate synthase8e-50197
NC_007645:6096345:6102642610264261037391098Hahella chejuensis KCTC 2396, complete genome3-dehydroquinate synthase2e-49196
NC_005071:704882:7236837236837248011119Prochlorococcus marinus str. MIT 9313, complete genome3-dehydroquinate synthase2e-49196
NC_008820:1356858:1356858135685813579761119Prochlorococcus marinus str. MIT 9303, complete genome3-dehydroquinate synthase5e-49195
NC_005956:1888500:1892236189223618933691134Bartonella henselae str. Houston-1, complete genome3-dehydroquinate synthase7e-49194
NC_011979:3341099:3344486334448633455921107Geobacter sp. FRC-32, complete genome3-dehydroquinate synthase2e-48193
NC_012559:2854640:2867863286786328689511089Laribacter hongkongensis HLHK9, complete genomeAroB2e-48193
NC_005955:1540838:1544471154447115456041134Bartonella quintana str. Toulouse, complete genome3-dehydroquinate synthase6e-48191
NC_015740:636667:6497216497216508241104Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete3-dehydroquinate synthase6e-48191
NC_009434:608765:6229076229076240101104Pseudomonas stutzeri A1501, complete genome3-dehydroquinate synthase7e-48191
NC_010002:6189733:6197128619712861982461119Delftia acidovorans SPH-1, complete genome3-dehydroquinate synthase3e-47189
NC_015563:1172745:1185915118591511870331119Delftia sp. Cs1-4 chromosome, complete genome3-dehydroquinate synthase4e-47189
NC_015410:617020:6288186288186299211104Pseudomonas mendocina NK-01 chromosome, complete genome3-dehydroquinate synthase3e-46186
NC_008825:3298506:3306727330672733078391113Methylibium petroleiphilum PM1, complete genomeputative 3-dehydroquinate synthase protein2e-46186
NC_009439:574437:5865945865945876971104Pseudomonas mendocina ymp, complete genome3-dehydroquinate synthase8e-46184
NC_015458:2998000:3016698301669830177861089Pusillimonas sp. T7-7 chromosome, complete genome3-dehydroquinate synthase1e-45184
NC_015318:219484:2230142230142240811068Hippea maritima DSM 10411 chromosome, complete genome3-dehydroquinate synthase4e-45182
NC_017192:1745114:1745114174511417461481035Arcobacter sp. L, complete genome3-dehydroquinate synthase5e-45182
NC_008781:708811:7230577230577241751119Polaromonas naphthalenivorans CJ2, complete genome3-dehydroquinate synthase9e-45181
NC_020418:448687:4486874486874497691083Morganella morganii subsp. morganii KT, complete genome3-dehydroquinate synthase8e-45181
NC_008554:3055000:3076213307621330773041092Syntrophobacter fumaroxidans MPOB, complete genome3-dehydroquinate synthase7e-45181
NC_015572:427732:4488794488794499611083Methylomonas methanica MC09 chromosome, complete genome3-dehydroquinate synthase7e-45181
NC_007912:3403101:3409428340942834105161089Saccharophagus degradans 2-40, complete genomePhosphoglucosamine mutase2e-44180
NC_008786:18688:2518725187263081122Verminephrobacter eiseniae EF01-2, complete genome3-dehydroquinate synthase3e-44179
NC_012658:1581486:1603493160349316045811089Clostridium botulinum Ba4 str. 657 chromosome, complete genome3-dehydroquinate synthase2e-43176
NC_009484:1627734:1629352162935216310101659Acidiphilium cryptum JF-5 chromosome, complete genome3-dehydroquinate synthase4e-43175
NC_015186:1698000:1699614169961417012721659Acidiphilium multivorum AIU301, complete genomeshikimate kinase/3-dehydroquinate synthase4e-43175
NC_014804:341663:349464349464350462999Thermococcus barophilus MP chromosome, complete genome3-dehydroquinate synthase1e-42173
NC_007484:266594:2790842790842801631080Nitrosococcus oceani ATCC 19707, complete genome3-dehydroquinate synthase3e-42172
NC_014315:352395:3674103674103685161107Nitrosococcus watsoni C-113 chromosome, complete genome3-dehydroquinate synthase3e-42172
NC_011834:546738:5739475739475750381092Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) chromosome,3-dehydroquinate synthase3e-41169
NC_017259:523840:5500465500465511281083Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,3-dehydroquinate synthase1e-39164
NC_014833:406889:4102154102154113211107Ruminococcus albus 7 chromosome, complete genome3-dehydroquinate synthase5e-39162
NC_013939:420500:4332574332574343091053Deferribacter desulfuricans SSM1, complete genome3-dehydroquinate synthase1e-38160
NC_013521:1976331:1993102199310219942891188Sanguibacter keddieii DSM 10542, complete genome3-dehydroquinate synthase7e-38158
NC_013169:1290000:1293352129335212951331782Kytococcus sedentarius DSM 20547, complete genome3-dehydroquinate synthase7e-38158
NC_007205:424500:4481464481464492521107Candidatus Pelagibacter ubique HTCC1062, complete genome3-dehydroquinate synthase6e-38158
NC_000868:416958:4309994309994320151017Pyrococcus abyssi GE5, complete genome3-dehydroquinate synthase6e-38158
NC_015518:1095879:1105005110500511060421038Acidianus hospitalis W1 chromosome, complete genome3-dehydroquinate synthase2e-37157
NC_002935:1315019:1355712135571213567911080Corynebacterium diphtheriae NCTC 13129, complete genome3-dehydroquinate synthase1e-37157
NC_016782:1316467:1329404132940413304831080Corynebacterium diphtheriae 241 chromosome, complete genome3-dehydroquinate synthase1e-37157
NC_016786:1316436:1329374132937413304531080Corynebacterium diphtheriae HC01 chromosome, complete genome3-dehydroquinate synthase1e-37157
NC_016787:1276983:1318822131882213199011080Corynebacterium diphtheriae HC03 chromosome, complete genome3-dehydroquinate synthase1e-37157
NC_016790:1259356:1296204129620412972831080Corynebacterium diphtheriae VA01 chromosome, complete genome3-dehydroquinate synthase1e-37157
NC_016785:1297208:1310987131098713120661080Corynebacterium diphtheriae CDCE 8392 chromosome, complete genome3-dehydroquinate synthase1e-37157
NC_016802:1317365:1330303133030313313821080Corynebacterium diphtheriae HC02 chromosome, complete genome3-dehydroquinate synthase1e-37157
NC_015474:252390:2768142768142778151002Pyrococcus sp. NA2 chromosome, complete genome3-dehydroquinate synthase3e-37156
NC_016799:1343020:1384856138485613859351080Corynebacterium diphtheriae 31A chromosome, complete genome3-dehydroquinate synthase3e-37155
NC_016800:1344189:1357968135796813590471080Corynebacterium diphtheriae BH8 chromosome, complete genome3-dehydroquinate synthase3e-37155
NC_016801:1361597:1374532137453213756111080Corynebacterium diphtheriae C7 (beta) chromosome, complete genome3-dehydroquinate synthase3e-37155
NC_016789:1334514:1375212137521213762911080Corynebacterium diphtheriae PW8 chromosome, complete genome3-dehydroquinate synthase3e-37155
NC_016783:1313008:1353704135370413547831080Corynebacterium diphtheriae INCA 402 chromosome, complete genome3-dehydroquinate synthase3e-37155
NC_016788:1315877:1328815132881513298941080Corynebacterium diphtheriae HC04 chromosome, complete genome3-dehydroquinate synthase3e-37155
NC_011725:1486635:1501668150166815027531086Bacillus cereus B4264 chromosome, complete genome3-dehydroquinate synthase7e-37154
NC_015672:1921023:1951119195111919521651047Flexistipes sinusarabici DSM 4947 chromosome, complete genome3-dehydroquinate synthase2e-36153
NC_015662:385461:4058614058614069731113Buchnera aphidicola (Cinara tujafilina) chromosome, complete3-dehydroquinate synthase2e-35150
NC_003106:2272313:2280907228090722819651059Sulfolobus tokodaii str. 7, complete genome3-dehydroquinate synthase2e-35150
NC_015435:354837:3660733660733671191047Metallosphaera cuprina Ar-4 chromosome, complete genome3-dehydroquinate synthase1e-35150
NC_012588:1655615:1666386166638616674501065Sulfolobus islandicus M.14.25 chromosome, complete genome3-dehydroquinate synthase7e-35148
NC_012632:1785210:1792284179228417933481065Sulfolobus islandicus M.16.27 chromosome, complete genome3-dehydroquinate synthase7e-35148
NC_012726:1685442:1692516169251616935801065Sulfolobus islandicus M.16.4 chromosome, complete genome3-dehydroquinate synthase7e-35148
NC_009440:1810301:1818086181808618191321047Metallosphaera sedula DSM 5348 chromosome, complete genome3-dehydroquinate synthase5e-35148
NC_019791:99793:1037111037111047541044Caldisphaera lagunensis DSM 15908 chromosome, complete genome3-dehydroquinate synthase8e-35147
NC_017275:1705827:1716598171659817176621065Sulfolobus islandicus HVE10/4 chromosome, complete genome3-dehydroquinate synthase8e-35147
NC_013124:1784117:1802119180211918031831065Acidimicrobium ferrooxidans DSM 10331, complete genome3-dehydroquinate synthase1e-34147
NC_014484:1690272:1734390173439017354331044Spirochaeta thermophila DSM 6192 chromosome, complete genome3-dehydroquinate synthase3e-34145
NC_014004:1:8558855896281071Candidatus Sulcia muelleri DMIN chromosome, complete genome3-dehydroquinate synthetase1e-33144
NC_008701:1607419:1611716161171616127471032Pyrobaculum islandicum DSM 4184, complete genome3-dehydroquinate synthase2e-33143
NC_009953:2106572:2124955212495521260281074Salinispora arenicola CNS-205 chromosome, complete genome3-dehydroquinate synthase3e-33142
NC_010118:1:8581858196571077Candidatus Sulcia muelleri GWSS, complete genome3-dehydroquinate synthase4e-33142
NC_015151:1403500:1409144140914414101901047Vulcanisaeta moutnovskia 768-28 chromosome, complete genome3-dehydroquinate synthase4e-33142
NC_015846:924087:9305309305309316031074Capnocytophaga canimorsus Cc5 chromosome, complete genome3-dehydroquinate synthase5e-33142
NC_017291:829577:8284578284578295961140Chlamydophila psittaci C19/98 chromosome, complete genome3-dehydroquinate synthase6e-33141
NC_015470:831863:8307438307438318821140Chlamydophila psittaci 6BC chromosome, complete genome3-dehydroquinate synthase6e-33141
NC_007181:141299:1487191487191497801062Sulfolobus acidocaldarius DSM 639, complete genome3-dehydroquinate synthase1e-32140
NC_007908:1328832:1341579134157913426491071Rhodoferax ferrireducens T118, complete genome3-dehydroquinate synthase5e-32138
NC_011027:1570955:1592104159210415931801077Chlorobaculum parvum NCIB 8327, complete genome3-dehydroquinate synthase3e-31135
NC_013522:1683326:1702497170249717040621566Thermanaerovibrio acidaminovorans DSM 6589, complete genomeShikimate kinase., 3-dehydroquinate synthase4e-31135
NC_015161:792955:8082468082468093371092Deinococcus proteolyticus MRP chromosome, complete genome3-dehydroquinate synthase8e-31134
NC_014761:1405408:1426665142666514276991035Oceanithermus profundus DSM 14977 chromosome, complete genome3-dehydroquinate synthase2e-30133
NC_014499:1:94069406104821077Candidatus Sulcia muelleri CARI chromosome, complete genome3-dehydroquinate synthase5e-30132
NC_013222:2595315:2609761260976126108221062Robiginitalea biformata HTCC2501, complete genomeputative 3-dehydroquinate synthase5e-30132
NC_010803:2067539:2090888209088820919521065Chlorobium limicola DSM 245, complete genome3-dehydroquinate synthase9e-30131
NC_010814:794211:8107948107948118641071Geobacter lovleyi SZ, complete genome3-dehydroquinate synthase7e-29128
NC_015500:987641:9958959958959969471053Treponema brennaborense DSM 12168 chromosome, complete genome3-dehydroquinate synthase2e-28126
NC_015732:1636368:1640529164052916416261098Spirochaeta caldaria DSM 7334 chromosome, complete genome3-dehydroquinate synthase5e-27122
NC_007404:1964935:1984095198409519851861092Thiobacillus denitrificans ATCC 25259, complete genome3-dehydroquinate synthase1e-26120
NC_009615:2985144:3008583300858330096441062Parabacteroides distasonis ATCC 8503 chromosome, complete genome3-dehydroquinate synthase5e-26118
NC_015577:1794560:1824887182488718259751089Treponema azotonutricium ZAS-9 chromosome, complete genome3-dehydroquinate synthase8e-25114
NC_010531:292044:2974052974052984931089Polynucleobacter necessarius STIR1, complete genome3-dehydroquinate synthase1e-24114
NC_005296:4574213:4583678458367845847961119Rhodopseudomonas palustris CGA009, complete genomepossible 3-dehydroquinate synthase7e-24111
NC_015164:2078500:2094250209425020953111062Bacteroides salanitronis DSM 18170 chromosome, complete genome3-dehydroquinate synthase2e-23109
NC_010546:4590994:4597417459741745986551239Cyanothece sp. ATCC 51142 chromosome circular, complete sequence3-dehydroquinate synthase2e-22106
NC_010612:681544:6815446815446827461203Mycobacterium marinum M, complete genome3-dehydroquinate synthase AroB_16e-21102
NC_010162:1222000:1238083123808312393931311Sorangium cellulosum 'So ce 56', complete genome3-dehydroquinate synthase1e-1997.4
NC_012108:1664341:1666819166681916680631245Desulfobacterium autotrophicum HRM2, complete genomeAroB22e-1997.1
NC_008278:5012000:5032946503294650344931548Frankia alni ACN14a, complete genome2-epi-5-epi-valiolone synthase (partial match)2e-1997.1
NC_014655:424486:4326024326024337081107Leadbetterella byssophila DSM 17132 chromosome, complete genome3-dehydroquinate synthase6e-1892
NC_008010:1:2611261138281218Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence3-dehydroquinate synthase2e-1789.7