Pre_GI: BLASTP Hits

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Query: NC_003366:842000:858399 Clostridium perfringens str. 13, complete genome

Start: 858399, End: 858941, Length: 543

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:784878:804166804166804708543Clostridium perfringens SM101, complete genomerubredoxin/rubrerythrin2e-91334
NC_008261:64678:923869238692928543Clostridium perfringens ATCC 13124, complete genomerubredoxin/rubrerythrin1e-86318
NC_016012:1010405:103907810390781039620543Candidatus Arthromitus sp. SFB-rat-Yit, complete genomerubrerythrin1e-72272
NC_015589:366296:379638379638380186549Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeRubrerythrin3e-70264
NC_015425:198315:206731206731207285555Clostridium botulinum BKT015925 chromosome, complete genomerubrerythrin6e-69259
NC_010001:109893:110768110768111313546Clostridium phytofermentans ISDg, complete genomeRubrerythrin4e-68256
NC_008593:196257:202087202087202638552Clostridium novyi NT, complete genomerubrerythrin3e-62237
NC_011565:190406:205867205867206418552Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,rubrerythrin2e-59227
NC_014633:681198:703282703282703827546Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencerubrerythrin1e-49195
NC_013156:980888:998284998284998709426Methanocaldococcus fervens AG86, complete genomeRubrerythrin2e-25114
NC_019978:2293327:230536723053672305786420Halobacteroides halobius DSM 5150, complete genomerubrerythrin2e-22105
NC_012658:1052957:105949010594901059921432Clostridium botulinum Ba4 str. 657 chromosome, complete genomerubrerythrin family protein2e-21101
NC_010520:1146000:115487511548751155306432Clostridium botulinum A3 str. Loch Maree, complete genomeferritin-like diiron domain protein4e-21100
NC_013887:1402980:140610514061051406530426Methanocaldococcus sp. FS406-22 chromosome, complete genomeRubrerythrin5e-2097.1
NC_000909:657904:672422672422672847426Methanocaldococcus jannaschii DSM 2661, complete genomehypothetical protein8e-2096.3
NC_014371:1328500:132968613296861330339654Prevotella melaninogenica ATCC 25845 chromosome chromosome II,rubredoxin1e-0859.3
NC_009464:2523092:255745925574592557830372Uncultured methanogenic archaeon RC-I, complete genomehypothetical protein4e-0857.8
NC_015311:2235550:225452422545242255177654Prevotella denticola F0289 chromosome, complete genomerubredoxin9e-0856.6
NC_009012:75000:961219612196456336Clostridium thermocellum ATCC 27405, complete genomeRubredoxin-type Fe(Cys)4 protein2e-0755.5
NC_013926:829665:838800838800839306507Aciduliprofundum boonei T469 chromosome, complete genomeRubrerythrin1e-0652.8
NC_014972:3771642:378963937896393790286648Desulfobulbus propionicus DSM 2032 chromosome, complete genomeRubredoxin-type Fe(Cys)4 protein2e-0652.4
NC_020291:4246500:426439542643954264730336Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomerubredoxin-type Fe(Cys)4 protein3e-0651.6
NC_013665:257438:281529281529281903375Methanocella paludicola SANAE, complete genomehypothetical protein6e-0650.4