Pre_GI: BLASTP Hits

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Query: NC_003366:613798:627408 Clostridium perfringens str. 13, complete genome

Start: 627408, End: 628928, Length: 1521

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010556:2581464:2604109260410926056441536Exiguobacterium sibiricum 255-15, complete genomepolysaccharide biosynthesis protein3e-63243
NC_004567:1089231:1098097109809710996471551Lactobacillus plantarum WCFS1, complete genomerepeat unit transporter8e-56218
NC_012984:1074721:1092711109271110942491539Lactobacillus plantarum JDM1, complete genometransporter1e-54214
NC_012984:1074721:1097751109775110993041554Lactobacillus plantarum JDM1, complete genometransporter7e-50198
NC_009615:1849237:1858946185894618604931548Parabacteroides distasonis ATCC 8503 chromosome, complete genomeflippase5e-46186
NC_010610:107500:1187581187581202661509Lactobacillus fermentum IFO 3956, complete genomeputative flippase9e-46184
NC_015152:272500:2979922979922994941503Spirochaeta sp. Buddy chromosome, complete genomepolysaccharide biosynthesis protein5e-45182
NC_019968:891904:9179429179429194861545Prevotella dentalis DSM 3688 chromosome 2, complete sequencehypothetical protein6e-43175
NC_014033:1633493:1645935164593516474851551Prevotella ruminicola 23 chromosome, complete genomemultidrug/oligosaccharidyl-lipid/polysaccharide (MOP) flippase superfamily transporter9e-39161
NC_015577:3113907:3129874312987431314031530Treponema azotonutricium ZAS-9 chromosome, complete genomeEpsT2e-35150
NC_006905:2175361:2182207218220721837331527Salmonella enterica subsp. enterica serovar Choleraesuis strputative 12 transmembrane segment protein5e-33142
NC_012125:1693774:1709480170948017110061527Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein6e-33142
NC_017068:1788235:1799725179972518012601536Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein5e-32139
NC_015420:35384:3709937099386311533Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, completetransporter5e-29129
NC_006448:957830:9670699670699685681500Streptococcus thermophilus LMG 18311, complete genomeexopolysaccharide biosynthesis protein, predicted membrane protein6e-1789.4
NC_018867:1161648:1183802118380211853311530Dehalobacter sp. CF chromosome, complete genomepolysaccharide transport protein, putative3e-1067
NC_014825:165701:1758111758111773131503Ruminococcus albus 7 plasmid pRUMAL02, complete sequencehypothetical protein5e-0963.2