Pre_GI: BLASTP Hits

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Query: NC_003366:2494907:2500163 Clostridium perfringens str. 13, complete genome

Start: 2500163, End: 2500245, Length: 83

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:2494907:25006192500619250070183Clostridium perfringens str. 13, complete genome7e-0959.3
NC_003366:2494907:25003542500354250043683Clostridium perfringens str. 13, complete genome7e-0959.3
NC_008261:2708929:27141782714178271426386Clostridium perfringens ATCC 13124, complete genometRNA-Tyr8e-0959.3
NC_008261:2708929:27146352714635271472086Clostridium perfringens ATCC 13124, complete genometRNA-Tyr8e-0959.3
NC_008262:2379144:23812052381205238129086Clostridium perfringens SM101, complete genometRNA-Tyr8e-0959.3
NC_008262:2379144:23807482380748238083386Clostridium perfringens SM101, complete genometRNA-Tyr8e-0959.3
NC_008262:2379144:23809402380940238102586Clostridium perfringens SM101, complete genometRNA-Tyr8e-0959.3
NC_008261:2708929:27143702714370271445586Clostridium perfringens ATCC 13124, complete genometRNA-Tyr8e-0959.3