Pre_GI: BLASTP Hits

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Query: NC_003366:2286083:2296256 Clostridium perfringens str. 13, complete genome

Start: 2296256, End: 2296945, Length: 690

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:2169262:217940921794092180098690Clostridium perfringens SM101, complete genomehypothetical protein3e-125447
NC_010723:915697:916914916914917600687Clostridium botulinum E3 str. Alaska E43, complete genomeBcl-2 family protein6e-65246
NC_021182:2219286:223120822312082231897690Clostridium pasteurianum BC1, complete genomeputative SAM-dependent methyltransferase5e-59227
NC_014393:1782811:180010818001081800803696Clostridium cellulovorans 743B chromosome, complete genomehypothetical protein2e-57221
NC_019970:1991944:199890119989011999611711Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeputative SAM-dependent methyltransferase1e-36152
NC_015555:863173:873530873530874240711Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeprotein of unknown function DUF6337e-35147
NC_008054:1030994:103178410317841032476693Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completehypothetical protein4e-29128
NC_010424:531727:535033535033535728696Candidatus Desulforudis audaxviator MP104C, complete genomeprotein of unknown function DUF6334e-27121
NC_007644:626992:649783649783650505723Moorella thermoacetica ATCC 39073, complete genomeProtein of unknown function DUF6336e-27120
NC_006322:2592176:259751525975152598228714Bacillus licheniformis ATCC 14580, complete genomeYqfN1e-25116
NC_006270:2591317:259665625966562597369714Bacillus licheniformis ATCC 14580, complete genomehypothetical protein1e-25116
NC_015875:1505034:152084515208451521522678Streptococcus pseudopneumoniae IS7493 chromosome, complete genomebcl-2 family protein3e-23108
NC_007005:5154317:518045851804585181159702Pseudomonas syringae pv. syringae B728a, complete genomeProtein of unknown function DUF6332e-21102
NC_013171:1194500:121854412185441219236693Anaerococcus prevotii DSM 20548, complete genomeprotein of unknown function DUF6332e-21102
NC_012526:4462:811081108790681Deinococcus deserti VCD115, complete genomehypothetical protein1e-1583.6