Pre_GI: BLASTP Hits

Some Help

Query: NC_003366:2106937:2116533 Clostridium perfringens str. 13, complete genome

Start: 2116533, End: 2117351, Length: 819

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009437:1481064:148245114824511483287837Caldicellulosiruptor saccharolyticus DSM 8903, complete genomediaminopimelate epimerase7e-64243
NC_015555:1450704:145070414507041451537834Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeDiaminopimelate epimerase1e-59230
NC_019970:1457794:146377214637721464605834Thermoanaerobacterium thermosaccharolyticum M0795, complete genomediaminopimelate epimerase2e-58225
NC_014410:1527405:152832115283211529154834Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,diaminopimelate epimerase6e-57220
NC_014209:1363151:136315113631511363975825Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,diaminopimelate epimerase1e-55216
NC_014122:205112:215168215168216016849Methanocaldococcus infernus ME chromosome, complete genomediaminopimelate epimerase1e-55216
NC_014538:1125000:114613411461341146958825Thermoanaerobacter sp. X513 chromosome, complete genomediaminopimelate epimerase2e-55215
NC_009012:3653111:365655036565503657392843Clostridium thermocellum ATCC 27405, complete genomeDiaminopimelate epimerase6e-52204
NC_016641:5306000:530607653060765306909834Paenibacillus terrae HPL-003 chromosome, complete genomediaminopimelate epimerase4e-50198
NC_013887:17160:378373783738724888Methanocaldococcus sp. FS406-22 chromosome, complete genomediaminopimelate epimerase4e-49194
NC_020134:845164:8620598620598661054047Clostridium stercorarium subsp. stercorarium DSM 8532, completecarbamoyl-phosphate synthase large chain9e-48190
NC_011565:1054414:105718210571821058009828Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,diaminopimelate epimerase1e-47189
NC_021182:401129:418550418550419419870Clostridium pasteurianum BC1, complete genomediaminopimelate epimerase3e-44179
NC_012225:1071159:107274910727491073588840Brachyspira hyodysenteriae WA1, complete genomeDiaminopimelate epimerase6e-44177
NC_011901:39215:443764437645212837Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeDiaminopimelate epimerase1e-43176
NC_013665:849508:850918850918851757840Methanocella paludicola SANAE, complete genomediaminopimelate epimerase2e-43176
NC_010730:180000:186950186950187810861Sulfurihydrogenibium sp. YO3AOP1, complete genomeDiaminopimelate epimerase2e-43176
NC_016077:8545:214002140022329930Acidaminococcus intestini RyC-MR95 chromosome, complete genomediaminopimelate epimerase2e-42172
NC_003228:3085793:310488631048863105704819Bacteroides fragilis NCTC 9343, complete genomediaminopimelate epimerase5e-42171
NC_013959:156991:159865159865160695831Sideroxydans lithotrophicus ES-1 chromosome, complete genomediaminopimelate epimerase1e-41169
NC_007516:1283210:1285667128566712867731107Synechococcus sp. CC9605, complete genomediaminopimelate epimerase5e-41168
NC_009614:4918877:493370049337004934542843Bacteroides vulgatus ATCC 8482 chromosome, complete genomediaminopimelate epimerase7e-41167
NC_011658:4672000:469333146933314694197867Bacillus cereus AH187 chromosome, complete genomediaminopimelate epimerase1e-40166
NC_014933:2525393:253782225378222538667846Bacteroides helcogenes P 36-108 chromosome, complete genomediaminopimelate epimerase2e-39162
NC_015164:3144745:315291831529183153718801Bacteroides salanitronis DSM 18170 chromosome, complete genomeDiaminopimelate epimerase3e-39162
NC_014253:431942:477202477202478032831Methanohalobium evestigatum Z-7303 chromosome, complete genomediaminopimelate epimerase4e-39161
NC_014222:1045281:106738010673801068336957Methanococcus voltae A3 chromosome, complete genomediaminopimelate epimerase3e-38158
NC_007759:2179000:219447421944742195361888Syntrophus aciditrophicus SB, complete genomediaminopimelate epimerase8e-38157
NC_016584:2244966:226601522660152266866852Desulfosporosinus orientis DSM 765 chromosome, complete genomediaminopimelate epimerase2e-37156
NC_014836:33278:501835018351052870Desulfurispirillum indicum S5 chromosome, complete genomediaminopimelate epimerase5e-37154
NC_002947:5961096:596231559623155963178864Pseudomonas putida KT2440, complete genomediaminopimelate epimerase2e-36152
NC_016830:6589575:659082765908276591657831Pseudomonas fluorescens F113 chromosome, complete genomeprotein DapF9e-36150
NC_014479:3079855:309464530946453095499855Bacillus subtilis subsp. spizizenii str. W23 chromosome, completediaminopimelate epimerase3e-35149
NC_020209:4549563:455081445508144551644831Pseudomonas poae RE*1-1-14, complete genomediaminopimelate epimerase3e-35149
NC_007712:4023516:402421440242144025038825Sodalis glossinidius str. 'morsitans', complete genomediaminopimelate epimerase5e-35148
NC_005061:647567:649651649651650481831Candidatus Blochmannia floridanus, complete genomediaminopimelate epimerase2e-34146
NC_014909:662500:663820663820664653834Candidatus Blochmannia vafer str. BVAF chromosome, complete genomediaminopimelate epimerase5e-33141
NC_020419:923949:941297941297942121825Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completediaminopimelate epimerase8e-33140
NS_000191:923949:941297941297942121825Uncultured Termite group 1 bacterium phylotype Rs-D17, completediaminopimelate epimerase8e-33140
NC_017986:5421000:542804054280405428846807Pseudomonas putida ND6 chromosome, complete genomediaminopimelate epimerase1e-32140
NC_009512:3118907:312729831272983128104807Pseudomonas putida F1, complete genomeDiaminopimelate epimerase1e-32140
NC_017058:862000:875845875845876657813Rickettsia australis str. Cutlack chromosome, complete genomediaminopimelate epimerase2e-32139
NC_017048:849000:852162852162852974813Rickettsia prowazekii str. GvV257 chromosome, complete genomediaminopimelate epimerase2e-32139
NC_017057:507500:510227510227511039813Rickettsia prowazekii str. RpGvF24 chromosome, complete genomediaminopimelate epimerase2e-32139
NC_000963:506500:510023510023510835813Rickettsia prowazekii str. Madrid E, complete genomediaminopimelate epimerase2e-32139
NC_017049:505000:508140508140508952813Rickettsia prowazekii str. Chernikova chromosome, complete genomediaminopimelate epimerase2e-32139
NC_017050:506500:510026510026510838813Rickettsia prowazekii str. Katsinyian chromosome, complete genomediaminopimelate epimerase2e-32139
NC_017051:505000:508150508150508962813Rickettsia prowazekii str. Dachau chromosome, complete genomediaminopimelate epimerase2e-32139
NC_017056:506500:510005510005510817813Rickettsia prowazekii str. BuV67-CWPP chromosome, complete genomediaminopimelate epimerase2e-32139
NC_017062:508500:511489511489512301813Rickettsia typhi str. B9991CWPP chromosome, complete genomediaminopimelate epimerase8e-32137
NC_005295:21995:422524225243049798Ehrlichia ruminantium str. Welgevonden, complete genomediaminopimelate epimerase3e-31135
NC_016884:641000:650811650811651611801Sulfobacillus acidophilus DSM 10332 chromosome, complete genomediaminopimelate epimerase5e-31134
NC_009881:562000:566521566521567333813Rickettsia akari str. Hartford, complete genomediaminopimelate epimerase8e-31134
NC_014541:4167916:416791641679164168725810Ferrimonas balearica DSM 9799 chromosome, complete genomediaminopimelate epimerase3e-30132
NC_017044:564000:569723569723570535813Rickettsia parkeri str. Portsmouth chromosome, complete genomediaminopimelate epimerase3e-30132
NC_003103:563961:564933564933565745813Rickettsia conorii str. Malish 7, complete genomediaminopimelate epimerase2e-30132
NC_016929:657451:672055672055672864810Rickettsia canadensis str. CA410 chromosome, complete genomediaminopimelate epimerase4e-30131
NC_013939:212331:217130217130217945816Deferribacter desulfuricans SSM1, complete genomediaminopimelate epimerase1e-29130
NC_010263:563814:569261569261570073813Rickettsia rickettsii str. Iowa, complete genomediaminopimelate epimerase1e-29130
NC_009882:563830:569277569277570089813Rickettsia rickettsii str. 'Sheila Smith', complete genomediaminopimelate epimerase1e-29130
NC_016908:563747:569194569194570006813Rickettsia rickettsii str. Colombia chromosome, complete genomediaminopimelate epimerase1e-29130
NC_016909:563727:569174569174569986813Rickettsia rickettsii str. Arizona chromosome, complete genomediaminopimelate epimerase1e-29130
NC_016911:563822:569269569269570081813Rickettsia rickettsii str. Hauke chromosome, complete genomediaminopimelate epimerase1e-29130
NC_016914:563941:569388569388570200813Rickettsia rickettsii str. Hino chromosome, complete genomediaminopimelate epimerase1e-29130
NC_009879:670169:682625682625683434810Rickettsia canadensis str. McKiel, complete genomediaminopimelate epimerase9e-30130
NC_015380:412277:414824414824415615792Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genomediaminopimelate epimerase5e-29128
NC_020209:397376:438844438844439668825Pseudomonas poae RE*1-1-14, complete genomediaminopimelate epimerase4e-28125
NC_015318:249445:269659269659270492834Hippea maritima DSM 10411 chromosome, complete genomeDiaminopimelate epimerase8e-28124
NC_015144:734726:734726734726735508783Weeksella virosa DSM 16922 chromosome, complete genomediaminopimelate epimerase1e-27123
NC_014759:2099623:211283021128302113609780Marivirga tractuosa DSM 4126 chromosome, complete genomediaminopimelate epimerase4e-27121
NC_009663:2500186:250506825050682505814747Sulfurovum sp. NBC37-1, complete genomediaminopimelate epimerase1e-26120
NC_014334:99000:1007731007731017801008Lactobacillus casei str. Zhang chromosome, complete genomediaminopimelate epimerase2e-26119
NC_013894:1194458:120558612055861206422837Thermocrinis albus DSM 14484 chromosome, complete genomediaminopimelate epimerase2e-26119
NC_008526:74500:9444894448954551008Lactobacillus casei ATCC 334, complete genomeDiaminopimelate epimerase2e-26119
NC_013943:2610902:262226026222602623072813Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomediaminopimelate epimerase6e-26118
NC_017300:1358260:135737013573701358263894Corynebacterium pseudotuberculosis 1002 chromosome, completediaminopimelate epimerase9e-26117
NC_017301:1360565:135967513596751360568894Corynebacterium pseudotuberculosis C231 chromosome, completediaminopimelate epimerase9e-26117
NC_015510:1709226:170922617092261710014789Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeDiaminopimelate epimerase2e-25116
NC_016830:4809210:481433848143384815141804Pseudomonas fluorescens F113 chromosome, complete genomediaminopimelate epimerase2e-24112
NC_017192:159047:175796175796176536741Arcobacter sp. L, complete genomediaminopimelate epimerase3e-24112
NC_010515:1618093:162272416227241623533810Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceDiaminopimelate epimerase2e-23109
NC_008061:2548849:255348825534882554297810Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceDiaminopimelate epimerase2e-22106
NC_008543:2696377:271269127126912713500810Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceDiaminopimelate epimerase2e-22106
NC_010118:207843:226860226860227645786Candidatus Sulcia muelleri GWSS, complete genomediaminopimelate epimerase1e-22106
NC_003551:390268:405568405568406407840Methanopyrus kandleri AV19, complete genomeDiaminopimelate epimerase4e-22105
NC_002937:1915787:193252019325201933368849Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completediaminopimelate epimerase5e-22105
NC_020125:1237536:125885012588501259611762Riemerella anatipestifer RA-CH-2, complete genomehypothetical protein6e-22104
NC_015978:32875:532505325054224975Lactobacillus sanfranciscensis TMW 1.1304 chromosome, completeDiaminopimelate epimerase2e-21103
NC_014935:31020:323323233233099768Nitratifractor saLSUginis DSM 16511 chromosome, complete genomediaminopimelate epimerase2e-21102
NC_009714:74500:899828998290800819Campylobacter hominis ATCC BAA-381, complete genomediaminopimelate epimerase6e-21101
NC_007760:645016:663416663416664216801Anaeromyxobacter dehalogenans 2CP-C, complete genomediaminopimelate epimerase1e-20100
NC_016787:1441350:144135014413501442243894Corynebacterium diphtheriae HC03 chromosome, complete genomediaminopimelate epimerase2e-1996.3
NC_016788:1445705:144481514448151445708894Corynebacterium diphtheriae HC04 chromosome, complete genomediaminopimelate epimerase2e-1996.3
NC_012039:53497:540895408954838750Campylobacter lari RM2100, complete genomediaminopimelate epimerase5e-1995.1
NC_016802:1317365:143457114345711435464894Corynebacterium diphtheriae HC02 chromosome, complete genomediaminopimelate epimerase1e-1893.6
NC_002935:1461458:146145814614581462351894Corynebacterium diphtheriae NCTC 13129, complete genomediaminopimelate epimerase2e-1893.2
NC_016782:1450674:144978414497841450677894Corynebacterium diphtheriae 241 chromosome, complete genomeDiaminopimelate epimerase2e-1893.2
NC_016783:1397975:147036914703691471262894Corynebacterium diphtheriae INCA 402 chromosome, complete genomeDiaminopimelate epimerase2e-1893.2
NC_016786:1359064:145004914500491450942894Corynebacterium diphtheriae HC01 chromosome, complete genomediaminopimelate epimerase2e-1893.2
NC_016800:1477937:147793714779371478830894Corynebacterium diphtheriae BH8 chromosome, complete genomediaminopimelate epimerase2e-1893.2
NC_016790:1417421:141742114174211418314894Corynebacterium diphtheriae VA01 chromosome, complete genomediaminopimelate epimerase2e-1893.2
NC_016789:1495274:149527414952741496167894Corynebacterium diphtheriae PW8 chromosome, complete genomediaminopimelate epimerase2e-1893.2
NC_016799:1501578:150157815015781502471894Corynebacterium diphtheriae 31A chromosome, complete genomediaminopimelate epimerase2e-1893.2
NC_016801:1422500:149156514915651492458894Corynebacterium diphtheriae C7 (beta) chromosome, complete genomediaminopimelate epimerase2e-1893.2
NC_016785:1407892:142795114279511428895945Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomediaminopimelate epimerase2e-1892.8
NC_002491:585807:600221600221600994774Chlamydophila pneumoniae J138, complete genomediaminopimelate epimerase2e-1789.4
NC_002179:237854:239911239911240684774Chlamydophila pneumoniae AR39, complete genomediaminopimelate epimerase2e-1789.4
NC_016605:132253:157477157477158466990Pediococcus claussenii ATCC BAA-344 chromosome, complete genomediaminopimelate epimerase2e-1582.8
NC_004552:235769:242986242986243768783Chlamydophila abortus S26/3, complete genomediaminopimelate epimerase6e-1478.2