Pre_GI: BLASTP Hits

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Query: NC_003366:1427785:1437121 Clostridium perfringens str. 13, complete genome

Start: 1437121, End: 1438122, Length: 1002

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010674:2856997:2874052287405228750531002Clostridium botulinum B str. Eklund 17B, complete genomehypothetical protein3e-163574
NC_008593:1859861:188248918824891883487999Clostridium novyi NT, complete genomehypothetical protein1e-151535
NC_016048:308342:308342308342309340999Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein3e-146518
NC_012781:1968827:1993498199349819945081011Eubacterium rectale ATCC 33656, complete genomehypothetical protein1e-142506
NC_014972:1923035:192532019253201926318999Desulfobulbus propionicus DSM 2032 chromosome, complete genomehypothetical protein2e-138492
NC_015737:981712:9831059831059841241020Clostridium sp. SY8519, complete genomehypothetical protein1e-136486
NC_004663:163152:1819261819261829361011Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein1e-134479
NC_014363:427393:4534094534094544221014Olsenella uli DSM 7084 chromosome, complete genomehypothetical protein1e-133476
NC_015389:1298689:1328985132898513299891005Coriobacterium glomerans PW2 chromosome, complete genomehypothetical protein3e-132471
NC_010337:1188373:1200514120051412015301017Heliobacterium modesticaldum Ice1, complete genomehypothetical protein8e-115413
NC_016776:3587983:358798335879833588147165Bacteroides fragilis 638R, complete genomehypothetical protein3e-1376.3