Pre_GI: BLASTP Hits

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Query: NC_003366:128783:135262 Clostridium perfringens str. 13, complete genome

Start: 135262, End: 135612, Length: 351

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007503:1111457:112777411277741128127354Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein5e-2199.8
NC_014828:107802:117016117016117366351Ethanoligenens harbinense YUAN-3 chromosome, complete genomehypothetical protein9e-1785.5
NC_010525:421769:425256425256425591336Thermoproteus neutrophilus V24Sta, complete genomeDomain of unknown function DUF17911e-1065.5
NC_016070:371185:391449391449391784336Thermoproteus tenax Kra 1, complete genomehypothetical protein4e-1063.2
NC_012808:1220378:126576112657611266225465Methylobacterium extorquens AM1, complete genomehypothetical protein9e-0958.9
NC_014307:233045:233877233877234335459Ralstonia solanacearum CFBP2957 chromosome, complete genomehypothetical protein2e-0857.8
NC_014311:198542:199374199374199832459Ralstonia solanacearum PSI07 chromosome, complete genomehypothetical protein3e-0857
NC_014153:2077647:208629620862962086769474Thiomonas intermedia K12 chromosome, complete genomeDomain of unknown function DUF17915e-0856.2
NC_008698:1556223:157196215719621572294333Thermofilum pendens Hrk 5, complete genomehypothetical protein6e-0856.2
NC_013173:8923:300603006030398339Desulfomicrobium baculatum DSM 4028, complete genomeDomain of unknown function DUF17916e-0856.2
NC_009635:800000:803053803053803400348Methanococcus aeolicus Nankai-3 chromosome, complete genomehypothetical protein2e-0754.7
NC_013730:5914142:593271859327185933173456Spirosoma linguale DSM 74, complete genomeDomain of unknown function DUF17912e-0754.3
NC_015499:119200:150619150619150966348Thermodesulfobium narugense DSM 14796 chromosome, complete genomehypothetical protein3e-0650.8